Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01974 ATGCTGGTTCGGAGAAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTTCAGGCTCTGGTAGCTCATGTCTTACTTTTCACCTTCACTATTACCCTTGCTCTCAAGCTTGATCATGTCATTCGTCACTCATGGTGGAAGGTATTTTTTCCTCTATGGGCTTTTCATGCTGTGGTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCGATGCCTCATGATCGCCAATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTACTTCTTTGTATGCATCTCGGGAGCAGTTATGTGATGAATTTAAGGATTGTCTTCATGCCCCTGATATTTCTTGAAATGGCGATTTTGTTTGATAACGTCAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATCTGACCGACGAAGCAGTATGGGAAACTCTTCCGCACTTCTGGATTTCAATATCCATGGTCTTCTTTATTGCTGCCACTGTGTTCACCCTTCTAAAGATATGTGGTGGAGGAAACGAGTTAACTCGCTGTCATACTTTTTTATGGATGaaaccggGTGATGTTGCAGCTCTAGGATGGTGGGACTTGTTTATTAACTTCGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACAAAGTGGCACAATCCAACTATTCATGGAGGCTGTCATATTACAGAACCATGCTCATCGTCAAATACCATAAGATACCTAGACTTTAGGACAGGAGGCTTAGTTGTTTACACAGATGAAGATAGACAGCAAAATGGGTTCTGCAATCTACAGGATATCGGTGGGCATATTATGAAAATTCCATTCATTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAGTGCAAAGAATCTGCCCCACTGGGTCATTTTTTCCCCACTTTTTTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCTTATAGATTAATAGAGAAGATAGTTCTTCTACTCTACTGTGGAGATATTCCTGAAAGATACTCAGCCATAGCATCAAAATCCCGTGAGTGCTTTGGGTTCTTTCGACGTGGGTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGGGTATAATACTTTCACCCCTGATACGGTGAAGAAAATGCCTAGGGCAGATCTGGTTGAGGAGATTTGGAGACTACAAGCTGCATTGGGCGAGCAGACACAAGTTACAAAATTTAGCCAGGATGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGCAGAATTTGCTTCGAGGAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCTGTCTGTCGTGGACCAATTGAAGAAAGGATGCCAGTATATGATGTGTAG 1455 0.4323 MLVRRRVMSWRRVAKALQALVAHVLLFTFTITLALKLDHVIRHSWWKVFFPLWAFHAVVARGRFSLPAPSMPHDRQWAPFHSLVATPLLVAFELLLCMHLGSSYVMNLRIVFMPLIFLEMAILFDNVRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGGGNELTRCHTFLWMKPGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDFRTGGLVVYTDEDRQQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSAKNLPHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYCGDIPERYSAIASKSRECFGFFRRGSRLLGWWSIDEGSREEEARLFCAGSPGYNTFTPDTVKKMPRADLVEEIWRLQAALGEQTQVTKFSQDEYERLQNEKILCRICFEEQINVVLLPCRHHILCSTCCEKCKRCPVCRGPIEERMPVYDV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01974 484 ProSiteProfiles Zinc finger RING-type profile. 437 472 IPR001841 -
Gma10g01974 484 Pfam Zinc finger, C3HC4 type (RING finger) 435 477 - -
Gma10g01974 484 SUPERFAMILY RING/U-box 428 480 - -
Gma10g01974 484 Pfam Transmembrane Fragile-X-F protein 35 312 IPR019396 -
Gma10g01974 484 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 484 - -
Gma10g01974 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 483 IPR013083 -
Gma10g01974 484 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01974 Gma-Chr10 47015698 47024490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01974 8 484 C3H Transcription Factor Family AT1G73950 60.619 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01974 - - gmx:100794581 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01974 10 47015698 47024490 Gma20g01739 20 44680278 44686984 GST