Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01972 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAATGTCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGTCCAAGTTGTCACCATGTTATTGACAACAGTGATGTAGCCCAAGAATGGCCTGGACTACCTTTAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATTCAAAACCTCACCCTTTCATTGATGAATTTATTACTTCTCTTGAAGTGGATGATGGGATTTGTTATACTCATCCCCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGGGTTCAGAAAGGCTGTAAAAAGATTATGGTCCTGTATATAAGCCCAGTGAGAGGAGGAAAACCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTTGGTGAAAAGGGTGACCAGGATATTCCTGAAACCACTGAAGCAACTACAGTTAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCTGAACCTCCTCGTATTGAAAATCGATGGTCAAATCTAGACCTAGGACAAGAATCACATCACATTCCTCAGCATCCTCAGACGGATTGTTTAGAGGATCTTCAGGCTGATTGTGAAGATCTTGCAAAAGATGATCTATTGATAGTAGAAACTGAAAATAATGAAGGGATAGATAATATAGAAAACAATGCTGAGGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGAGCTCACAACAACTTGTTGAAGCATTGTTCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAAGAGGGATGGGGAAAATGAGCACAAAAAACGATCTAGTCTTTCTGTTTATGCTAATCTAGGACCAGAGCATCTGAAGAAAGATATCGTAGAGTGTCAAAATCTTGTCCTTGACACTGCAAATGTAGTGCCTGAGACACCACCTTCAGAATTTCAACTAAGTCAGCTGGATTTCAGTTCACAGGATAGCTTTGTTTCCTGGTGTGCCAGCAAAGCATTTGACTAA 1269 0.409 MAGPSWLVDKSRIATKIKNVSGTCGKVIWKSNPSRACPSCHHVIDNSDVAQEWPGLPLGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIDEFITSLEVDDGICYTHPQHLPGVKQDGSASHLFHRAIKAYNTGSRKRRKICGQDFGDVRWHKTGRTKPVILNGVQKGCKKIMVLYISPVRGGKPEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVKFGEKGDQDIPETTEATTVKVDPVTPKSVTPEPPRIENRWSNLDLGQESHHIPQHPQTDCLEDLQADCEDLAKDDLLIVETENNEGIDNIENNAEEDSKWWDSESQNLLSSQQLVEALFLCDDLLQSQSPKRDGENEHKKRSSLSVYANLGPEHLKKDIVECQNLVLDTANVVPETPPSEFQLSQLDFSSQDSFVSWCASKAFD 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01972 422 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Gma10g01972 422 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 416 - -
Gma10g01972 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 416 IPR044799 GO:0003700
Gma10g01972 422 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Gma10g01972 422 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Gma10g01972 422 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01972 Gma-Chr10 47001294 47005492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01972 28 221 NAC Transcription Factor Family AT1G28470 56.500 1.86e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma10g01972 NAM 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01972 - - gmx:100787702 849.351