Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01970 ATGGATGGAGGCTGTGTCACAGACGAAACCACCACATCCAGCGACTCTCTTTCCGTTCCGCCGCCCAGCCGCGTCGGCAGCGTTGCAAGCGCCGTCGTCGACCCCGACGGTTGTTGCGTTTCCGGCGAGGCCGAATCCCGGAAACTCCCTTCGTCGAAATACAAAGGCGTGGTGCCGCAACCGAACGGTCGCTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACTTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCTGCGCTTCCGCGGCCCCGACGCCGTCACCAACTTCAAGCCTCCCGCCGCCTCCGACGACGCCGAGTCCGAGTTCCTCAACTCGCATTCCAAGTTCGAGATCGTCGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCACGCGCGGTGGTAGGCGCCGCCTCGACGCTGACACCGCGTCGAGCGGTGTGTTCGACGCGAAAGCGCGTGAGCAGCTGTTCGAGAAAACGGTTACGCCGAGCGACGTCGGGAAGCTGAATCGATTAGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTAAGCGGATCCGGCGACGAAAGCTCGCCGTGCGTGGCGGGGGCTTCGGCGGCGAAGGGAATGTTGTTGAACTTTGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTGCTTACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTTCGAGCCGGTGACGCGGTTCAGTTCTTCAAGTCGACCGGACCGGACCGGCAGCTATATATAGACTGCAAGGCGAGGAGTGGTGAGGTTAACAATAATGCTGGCGGTTTGTTTGTTCCGATTGGACCGGTCGTTGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTCAACCTTTTGAAACTACCCGTACCCGGTTCGGATGGTGTAGGGAAGAGAAAAGAGATGGAACTGTTTGCATTTGAATGTTGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1056 0.5786 MDGGCVTDETTTSSDSLSVPPPSRVGSVASAVVDPDGCCVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGPDAVTNFKPPAASDDAESEFLNSHSKFEIVDMLRKHTYDDELQQSTRGGRRRLDADTASSGVFDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSGDESSPCVAGASAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGPDRQLYIDCKARSGEVNNNAGGLFVPIGPVVEPVQMVRLFGVNLLKLPVPGSDGVGKRKEMELFAFECCKKLKVIGAL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01970 351 SUPERFAMILY DNA-binding pseudobarrel domain 170 283 IPR015300 -
Gma10g01970 351 SMART rav1_2 53 114 IPR001471 GO:0003700|GO:0006355
Gma10g01970 351 ProSiteProfiles AP2/ERF domain profile. 53 108 IPR001471 GO:0003700|GO:0006355
Gma10g01970 351 CDD AP2 52 107 IPR001471 GO:0003700|GO:0006355
Gma10g01970 351 Gene3D - 161 295 IPR015300 -
Gma10g01970 351 MobiDBLite consensus disorder prediction 1 28 - -
Gma10g01970 351 MobiDBLite consensus disorder prediction 1 23 - -
Gma10g01970 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 351 IPR044800 GO:0003700
Gma10g01970 351 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Gma10g01970 351 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Gma10g01970 351 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 351 - -
Gma10g01970 351 SMART B3_2 172 285 IPR003340 GO:0003677
Gma10g01970 351 ProSiteProfiles B3 DNA-binding domain profile. 172 286 IPR003340 GO:0003677
Gma10g01970 351 CDD B3_DNA 171 280 IPR003340 GO:0003677
Gma10g01970 351 Pfam B3 DNA binding domain 172 269 IPR003340 GO:0003677
Gma10g01970 351 Gene3D AP2/ERF domain 52 109 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01970 Gma-Chr10 46963212 46964445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01970 1 351 B3 DNA Binding Superfamily AT1G25560 57.403 5.94e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Gma10g01970 B3 9.6e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01970 K09287 - gmx:732601 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01970 10 46963212 46964445 Gma20g01744 20 44743447 44745063 GST