Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01962 ATGCAGGTAGTAACTTACAAAATAGTTGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTCGAAGTTAAAGTTATTACGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGCTGCCAAGCCTAACCCACCAAGATACAACAGGAATCGTGCTGGATCATCAAGTTGA 291 0.4158 MQVVTYKIVGLSFYTSEKTLRAAFEGFGELVEVKVITDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDAAKPNPPRYNRNRAGSSS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01962 96 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
Gma10g01962 96 SMART rrm1_1 5 78 IPR000504 GO:0003723
Gma10g01962 96 SUPERFAMILY RNA-binding domain, RBD 9 93 IPR035979 GO:0003676
Gma10g01962 96 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 82 IPR000504 GO:0003723
Gma10g01962 96 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 6 94 - -
Gma10g01962 96 Gene3D - 5 96 IPR012677 -
Gma10g01962 96 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 6 94 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01962 Gma-Chr10 46889612 46890902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01962 7 92 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 4.10e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01962 - - vun:114191397 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01962 10 46889612 46890902 Gma20g01751 20 44817990 44820969 GST