Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01950 ATGGGTGACCCTTATGGGCTACCGGAGGATCTCCGGCGGCTTATACCAGCCAGAAGTACCCATTTGAACCCTTCAAACACACACCTACTTGAGCCACTTTGTCTTCACCATGGTCTCAGTAGTGCTGTTTCTTCTGCTACTACTCCACACACTAGTTTTGACCCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGGTTTCACTCACCACTTTGCTCATCATCATGATTATTCTTCTTCCTCTGGtgtaaaccctgttgttactgctactgctgctgctactactactgtctcggatcatgcattctgcagcATGGAGAGTGCAGAGAAAGGGTGGTTTGGGTTTGACTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAgaaagcacccttgtggaatgagatttctagGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGATCAAGCAAATAACGCTCATCATGCTCATGCCTCAACTTCTGATAAAACCCATCGTGCTGGTGGAAACACTGTTACTACTAATCAAAATCAAACCTGCACAATTAACCAAGACTACAATAATGGTAATAATTCTAACAATAACCCCAAATGCTCAGAGTGTTTGAGTATCTCAAATTCATCTGAATTCGAGACATCCTCATCAGAGAACAATGATGAGGATCTCTCAGCCATTGCATTCATGATGAAGCAGCAGTCAAGGGATGAGAAGCAGAAAGGGTTGGATGATCATATTCATAGGCAAAATGATCAATATAGGAGGGTGAGAAAAAGCTGGAGAGCAAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCATGGATGGAGAGAATGCTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAGGGAGGAAGAAAGGAAGAGAAAAGAGTCAATGTGGCTTGACAAACAGGTTCATGAACTTTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGGATAGGACTTGAAGCATTGCCATTGGTTGAAGAAGAACCACCAAATAAGAACAAGAGCCAAGGAAATTACAATATTGATGCCAATGAGTTTCCCTCTGAGGGTGTGGATCATAATAGAAGTAGTAGCAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATACAACTAAGGACTAGTTTTGAGCAAAGATTCAGAGAAAATAATAATGGGTACTTATTGGAGAATGGGCTTTGGGATGAAATAGCAGCAAAACTGGCTTGTTTGGGGTTTGATAGGAGTGCAAGAGAGTGCAAGCAAATATGGGATGAGATTAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGATGGTGCAAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGATGATGATGATCTTTGA 1629 0.4015 MGDPYGLPEDLRRLIPARSTHLNPSNTHLLEPLCLHHGLSSAVSSATTPHTSFDPNMVGDVFFPRGFTHHFAHHHDYSSSSGVNPVVTATAAATTTVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANNAHHAHASTSDKTHRAGGNTVTTNQNQTCTINQDYNNGNNSNNNPKCSECLSISNSSEFETSSSENNDEDLSAIAFMMKQQSRDEKQKGLDDHIHRQNDQYRRVRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMASREEERKRKESMWLDKQVHELWAKEKAWVEARDAALIEVVRKHIGIGIGLEALPLVEEEPPNKNKSQGNYNIDANEFPSEGVDHNRSSSSRWTEMEISNLIQLRTSFEQRFRENNNGYLLENGLWDEIAAKLACLGFDRSARECKQIWDEISISLRRTVDECDDGAKRRPWYLGLKLTDDDDL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01950 542 CDD GT1 120 186 - -
Gma10g01950 542 PANTHER - 30 520 - -
Gma10g01950 542 Coils Coil 351 371 - -
Gma10g01950 542 CDD GT1 449 517 - -
Gma10g01950 542 MobiDBLite consensus disorder prediction 215 238 - -
Gma10g01950 542 Pfam Myb/SANT-like DNA-binding domain 449 521 IPR044822 -
Gma10g01950 542 Pfam Myb/SANT-like DNA-binding domain 120 207 IPR044822 -
Gma10g01950 542 ProSiteProfiles Myb-like domain profile. 443 511 IPR001005 -
Gma10g01950 542 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 30 520 - -
Gma10g01950 542 ProSiteProfiles Myb-like domain profile. 120 179 IPR001005 -
Gma10g01950 542 Gene3D - 122 184 - -
Gma10g01950 542 Gene3D - 451 516 - -
Gma10g01950 542 SMART sant 447 513 IPR001005 -
Gma10g01950 542 SMART sant 118 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01950 Gma-Chr10 46766643 46769254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01950 121 516 Trihelix Transcription Factor Family AT5G03680 42.893 6.66e-89 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma10g01950 Myb_DNA-bind_4 4.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01950 - - gmx:100784522 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01950 10 46766643 46769254 Gma20g01761 20 44926064 44928595 GST