Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01946 ATGATCCTTTTCACTCCTATTTCAGATGGAAAAATTCTCCGAGGAGATAAAGAAGCACCCGAGACAGCACCACTGCAACACCGTTTCTTCCAACCCCTTCTTTCTACCAATTATTATTCCTATGTCATAACGATGGTAAACCTACAAAAGGTTGAACAACATGTTACAACAGAAGGTCAAAGGAAAAAGAATAAGAGGAAGAAGCAAGTTTTGGTTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGTAAAGAGTTTATCAAGGAGTACATTGCTTCCCATCCTGAGTCACCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCAAATGCGTGGAAATCAATGAGCCTTGAAGAGAAGGAAAAGTATGCTAGGCATGCACGTGAAGTGTGGGATGGCTACTTGAGTTCAGGTGCTGCCCCCAACCCCAAGCCAAGGAAACAGACTAAACTGGTAACAAGATGCTCTCCTGGTCGCTTATTCAAAGTGTTACAGCGCCTCACACCTGAGCAGAAGGAGGCAGTTAAGAGCATGGGCTTTGGCAGCCTCCTTGGCCTTAGATGCCGAACGCTTCGACGCAGTTTGTGTCTTTGGTTATTGGAGAGATTTGACACTACTAATTGCAGCTTAGAGATCTGCAATGTGGACGTGCCATTAACTCCAAATGATGTAGAGATGGTATTGGGATTATCAGCCAGTGGTAAAGAAGTGGTGAACTCTGGTCCAGAAGACATGATTTCAGATTTACGTAACAGTTACAACGCGATAAATCATGGAATTTCAGTGCGACTTTTAGAGGAGCAGTTGGCAACTGCAGAGTCTGGAGATGATTTTAAGAGGTCATTTGTACTCTATGTGCTGGGAACGCTTCTGTGCCCAACAGCTAGGCTGGATGTTAGCCCGTCATTCCTCCACTTTTTGACAAATATGGATCTTGTACATCAGTATAACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATTGCGCTTCCATCAAGGGAAGCAAAGAACTGTTGGTGGTTGTCTTTTATTTTTGCAGCTTTTCTACTATGAGAACATATCTCTTGAAGGGTCTTCTGCTCCAGTTCCAACGATTGTTCCATATCTGTTTTCTTGGGGAGAGGAGGAGATTGCTGAGAGAGAAAAGCGAGAAAAGGAACTTGGCGGCTATGGTTCTGGGGAGCTAGCAAGCAAGAAGAAGTGCCATCATATGGAGTTCCCTGAGTATAGAGATCATCCAGATGGCCCACTGATCACCACAGAAATCAGTAGAATTGGGCATGGTCCTCTTAGACCAGAATCAAATGAGGAAGACATCCGTGGTTTTCCTAGGAATAGAACCGTGTTGAGTGGAGATGTGGATTTAGTAGTTGAATCAATTGAAGCTCCTTGTCGGAACAAAGAATATGGTTGCAATGAAACTGTGGATTGCATGACTAGCAATGACCATGAAGTGACATGCATCTATTCTCCATGTGTCTGTCCATTTCAAGACTGTAACTATGTTGGGCCATTTGAACAGTTGGCATTGCATTTCAGCAGTAAACACTGGGATTCCGGAAGACAATTCAAATATAATCATCCATTGGCTATCTCTTTACAGATGGATGAACAATTCCTTGTTCTCCAGGCAGAAGAAGATGGGGTTCTTTTTCTCCTCAACAAGGGCACAGAAACTAATGGGAATACAGTGATGATAACCTGTATTGGTCCAAATTCATCAAAAGAAGGATTTATTTATGAGATTGTTTCATGTAGGGGGAGAAGTTCTCTCAGATTAAAGTCTGTAGCTGAGAATTTTCCTGGTCGAATGGAGGATTTCCCCCCAGTAGATTTTCTTTTGATTCCTTTCAATTTTCTTGTGTCTTCTAGGGAGCTCAATGTAGATATTTGTATATGGAATTCTACTGAGCATAATGTAGATTGCTCTTGA 1938 0.4283 MILFTPISDGKILRGDKEAPETAPLQHRFFQPLLSTNYYSYVITMVNLQKVEQHVTTEGQRKKNKRKKQVLVPRPACSWVYFSKEFIKEYIASHPESPGLKAATKAASNAWKSMSLEEKEKYARHAREVWDGYLSSGAAPNPKPRKQTKLVTRCSPGRLFKVLQRLTPEQKEAVKSMGFGSLLGLRCRTLRRSLCLWLLERFDTTNCSLEICNVDVPLTPNDVEMVLGLSASGKEVVNSGPEDMISDLRNSYNAINHGISVRLLEEQLATAESGDDFKRSFVLYVLGTLLCPTARLDVSPSFLHFLTNMDLVHQYNWGKFLLDRLVREVLRFHQGKQRTVGGCLLFLQLFYYENISLEGSSAPVPTIVPYLFSWGEEEIAEREKREKELGGYGSGELASKKKCHHMEFPEYRDHPDGPLITTEISRIGHGPLRPESNEEDIRGFPRNRTVLSGDVDLVVESIEAPCRNKEYGCNETVDCMTSNDHEVTCIYSPCVCPFQDCNYVGPFEQLALHFSSKHWDSGRQFKYNHPLAISLQMDEQFLVLQAEEDGVLFLLNKGTETNGNTVMITCIGPNSSKEGFIYEIVSCRGRSSLRLKSVAENFPGRMEDFPPVDFLLIPFNFLVSSRELNVDICIWNSTEHNVDCS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01946 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 514 IPR013083 -
Gma10g01946 645 SMART hmgende2 71 142 IPR009071 -
Gma10g01946 645 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 45 644 - -
Gma10g01946 645 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 128 IPR009071 -
Gma10g01946 645 ProSiteProfiles Zinc finger SIAH-type profile. 461 519 IPR013010 GO:0008270
Gma10g01946 645 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 45 644 IPR044286 -
Gma10g01946 645 Pfam Seven in absentia protein family 456 600 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gma10g01946 645 SUPERFAMILY TRAF domain-like 462 634 - -
Gma10g01946 645 CDD HMG-box 72 133 - -
Gma10g01946 645 SUPERFAMILY HMG-box 57 133 IPR036910 -
Gma10g01946 645 Gene3D High mobility group box domain 56 135 IPR036910 -
Gma10g01946 645 Pfam Plant mobile domain 219 355 IPR019557 -
Gma10g01946 645 Pfam HMG (high mobility group) box 73 134 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma10g01946 Sina 1.1e-14 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01946 - - gmx:100782920 1208.74