Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01907 ATGGAAGCACCAGAAGAACTCTCTTTTGGGGGCTCCAAAGATCACACCAACATTGCCAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCTCCTATTCCCTTCTCCATCACCGCCAATTCTTCCACCGGAGGAGAAAAAGAAGAAGATTGCTACAATGTTGATGATGACAACATCATAAAAAATGAAGATATTAACAACAACAACATCAATAACATCAACAGCACTCCCACCACTTCTGCAGAATTACAAGACATCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTTTTAGCACAAGGACAATCCCGGGAATCCCCGAAACACGCCGAGGAAGACGCCGGCATGAGCTACGCCAAGCACAACAGTAGGAAATTCTTGGAAGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTCTATGAATGCAAGACATGTAACAGAACCTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCAAGTCACAAGAAGCCTAAGGCATTGATGGCTATTGGCCAAAAGAAAAAACAGCAACATCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAGTCACCATTTTCCATTCAATTGAATACAAATGGGAATTTGTACAGCAGCAGCAGCAACAACAACAACAAGTCCAAGGTGCATGAGTGTTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCATTGGGAGGCCACATGAGACGCCACCGCGCTCCGGTCGGAACCACCCCCACCGCCACCATACTCTCCTTCACCCCGTTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCTGAAGATGATCATAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACATGGACAGAAACAACCACAACAACATCATCATCCAGAACAAAAACAACAACAGCCACAACAGCAACAAACAAGTCTTGTCTTCCCCGTACCAGCTTTGGTTGATTGTCATTACTAA 1050 0.4543 MEAPEELSFGGSKDHTNIAKGKRTKRVRPQSPIPFSITANSSTGGEKEEDCYNVDDDNIIKNEDINNNNINNINSTPTTSAELQDITDEEEDMANCLILLAQGQSRESPKHAEEDAGMSYAKHNSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALMAIGQKKKQQHLLSSDEEEFQLKTNKSPFSIQLNTNGNLYSSSSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTPTATILSFTPLALEPEEDHPRKKRNVLNLDLDLNLPAPEDDHRESKFAFASKQQQQQHGQKQPQQHHHPEQKQQQPQQQQTSLVFPVPALVDCHY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01907 349 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 349 - -
Gma10g01907 349 PANTHER ZINC FINGER PROTEIN ZAT5 12 349 - -
Gma10g01907 349 MobiDBLite consensus disorder prediction 1 48 - -
Gma10g01907 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 247 IPR013087 -
Gma10g01907 349 SUPERFAMILY beta-beta-alpha zinc fingers 143 247 IPR036236 -
Gma10g01907 349 MobiDBLite consensus disorder prediction 31 47 - -
Gma10g01907 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Gma10g01907 349 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Gma10g01907 349 SMART c2h2final6 144 166 IPR013087 -
Gma10g01907 349 SMART c2h2final6 225 247 IPR013087 -
Gma10g01907 349 Gene3D Classic Zinc Finger 119 203 - -
Gma10g01907 349 Gene3D Classic Zinc Finger 204 255 - -
Gma10g01907 349 Pfam C2H2-type zinc finger 143 169 - -
Gma10g01907 349 Pfam C2H2-type zinc finger 224 250 - -
Gma10g01907 349 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Gma10g01907 349 MobiDBLite consensus disorder prediction 288 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01907 Gma-Chr10 46245969 46247067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01907 1 349 C2H2 Transcription Factor Family AT5G04390 42.298 5.06e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g01907 zf-C2H2_6 6.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01907 - - gmx:100819786 586.645