Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01892 ATGAACAATAGCACCAACAACAAGGAGAACAACGGTTTTGACCCAAGTGAGTTCACATATGGAGTAGCTTTTGTAATTGGCTTGATCTTCTTACTTGTCAGCATAGCTTTGGCATGTGTGCGTCTGCGCATGGCTCGTGGTCCTAACATGCTGAACATTTTGGCTGGTATTCCACCATCTCGCCATGCAAGATCATCAGAAGAAGACAACTCAGCTGAACAAGGGCTTCATCACATTGACAAAAGTTTTGAGAGGTATCCAAAGCTGCTATACTCTCAAGTAGAGAAGGGTTCAAGTTCATCAAGTGTTGTTTCTTCTAGTTGCTCCATATGCTTAGGTGACTACAAAGAAAGTGACACGTTGAGGTTGCTTCCACACTGTGACCATCTTTTCCATCTTGCTTGTGTTGATCCTTGGCTTAGGTTGCATTCAACTTGTCCCATATGTAGAAAATCATCTATTCATGCTTAG 471 0.4246 MNNSTNNKENNGFDPSEFTYGVAFVIGLIFLLVSIALACVRLRMARGPNMLNILAGIPPSRHARSSEEDNSAEQGLHHIDKSFERYPKLLYSQVEKGSSSSSVVSSSCSICLGDYKESDTLRLLPHCDHLFHLACVDPWLRLHSTCPICRKSSIHA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01892 156 Pfam Ring finger domain 107 150 IPR001841 -
Gma10g01892 156 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gma10g01892 156 SMART ring_2 108 149 IPR001841 -
Gma10g01892 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 - -
Gma10g01892 156 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Gma10g01892 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 154 IPR013083 -
Gma10g01892 156 CDD RING-H2_PA-TM-RING 110 150 - -
Gma10g01892 156 SUPERFAMILY RING/U-box 107 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01892 Gma-Chr10 46111976 46112688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01892 18 154 C3H Transcription Factor Family AT5G06490 35.948 1.99e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01892 - - gmx:102663718 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01892 10 46111976 46112688 Gma20g01820 20 45584536 45585021 GST