Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01880 ATGGCCACAGCAGAAGAAATTTCAACTTTGAAACTGTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCACCAATCTCATTCCAGTAAAACTCGAAGACCGCTCATCAGAACTTGATATGGGTTCAAACTTCTCAGAACATAGCAGCTTCTGCAAGTTGCTAGAATGCATTGATTTTGAAGCAGACACAGAAGTGGTAGGTCTCACGTCTCATCATAAGGTCGAAAACTCCATTGAAACAAGTCTTCCACATAATTCCAATTTGCCAGAAGAACCAATGGTGTCAACGAAAAAGGAAGCAACATGTTATGCAACAAGGCGTTACAGAGGTGTGAGGAGAAGGCCATGGGGGAAGTTTGCGGCAGAGATTCGCGACCCCAAAAAGAAAGGGAGCAGGGTGTGGCTTGGCACATTTGACACTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCACAAAGCCGTGTTGAATTTCCCTCTGGAGGCTGGAATGTCTCATCCAGAGCCCAACAGTAGTGGCAGGAAAAGGAGAAGAGATTATACAACAGCTGTCACAAGTTCAAGTCATGTCATGTCATGA 606 0.4505 MATAEEISTLKLLRQYLLGDISDPFLTNLIPVKLEDRSSELDMGSNFSEHSSFCKLLECIDFEADTEVVGLTSHHKVENSIETSLPHNSNLPEEPMVSTKKEATCYATRRYRGVRRRPWGKFAAEIRDPKKKGSRVWLGTFDTEIDAAKAYDCAAFRMRGHKAVLNFPLEAGMSHPEPNSSGRKRRRDYTTAVTSSSHVMS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01880 201 Pfam AP2 domain 110 161 IPR001471 GO:0003700|GO:0006355
Gma10g01880 201 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Gma10g01880 201 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Gma10g01880 201 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Gma10g01880 201 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Gma10g01880 201 MobiDBLite consensus disorder prediction 170 201 - -
Gma10g01880 201 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Gma10g01880 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 189 - -
Gma10g01880 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 189 - -
Gma10g01880 201 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Gma10g01880 201 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01880 Gma-Chr10 46020233 46020838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01880 108 187 AP2-EREBP Transcription Factor Family AT5G07580 73.750 7.80e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma10g01880 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01880 - - gmx:100499732 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01880 10 46020233 46020838 Gma10g01880 10 46020233 46020838 ECH
Gma10g01880 10 46020233 46020838 Gma20g01830 20 45661253 45662120 GST