Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01878 ATGGCCACTTTCGGTTTTCAGGCAATGGCACACTGCTTGTTGCTTCGGAGAATTTCACAATTGTCAAGGTTCAGATCAATGCCAGATATACCTGGGACTTCTTCAGCAAGAATGGCAGCTTCTGAAACAAATTCTAGAAGAACAGGTCAACGAAACAATAGAGTTGTTTGGGAGAATTTATCTGAGGAAGAGAAGCTTGCTGCGATAGAGAGTCTTACTGTTTATTGCAGGCCTATAGAGCTCTACAACATAATTAAGAGTCGTACTAAAAAAAAGCCATTATACCTTCGGAGATGTATGGACTACCATATAAAGGCTAAGCGCAAGAAGAGGCTTGTATTGACGGCTTCGTTGTCATGGAAAGATGATGATAATCGGGCGCTGTTTCCTTTGTGTGTCTGTCTGGGAAGGCTGGATCCCAATACGGAAGCTCGAAGCGCACAAAGGTATCATGTTGGTAAGATATCCTCATTTAAAGGACTCTCAGGAGTTGATGGGAAGGGGAATACTCAACTCGAAGTAAACTTCATGCTTCCCGAATTTGATAAGTTAGCTGGGGAAGTTAGCACTGCCAAATATTGGTTCTTGGTCTTTGCTTCTGCGGGGAACCCAATTTCATTATCTAGAGCCAATTCGAGCCCGTGGCCTGTGGAGGTGTCTTCTAATGAATCATGGGGCGGAGAGAGATGTTTATATGGAAAAGTATCTTTGAACTTTCATCAAGATAATGGAAATGTATTTCCATATTTTCTTTTGCGAAAGCCAGGCAAGATTAAGATTGAGATGAATTTGCATCCATGTATTTTGACGTATCATTTGCAGTATTGTATTCAAAGAAAGAGCAAGATCATCTCAATTCAAGATTCCAGGAACTCTAAGGCTAAATTAGAGCAATTTGAAGTCTCATTTTGTCTTGAAGAATTTGGAGCTAGGGAAAAATCTTCTAGCCAGACAAATACAAGCACAGAAGTATCATGGATTCCGCCATCTTCATCACAAATCCTTTGGTCCAAAGAAGGAAATGTGGTATTTTGTTATAGGTATTATAATAATAAGTTGCACAGAACGGAAGTAACTGAAAATTTCTCCTGTACAATTTGTTTGGATCGATGTGCATCATACAAGGGATTAAAATGTCACCTACAATCGTCACATGATGGCTATTTCAATTTTGAATTTTCGAATTCGGAGGATTTTCCATTTGTCTTTTTGAGTGTGAAGACCGTAATCAGTACTATAAAGGATGTTGGAGCGGGTATTAATCCAAGACTACAAACTTTTCTATATTGTGCCAAACGACTTAAGCATAGAGAACCGACTCGTGGTAGAACAAATGAGACAGACCGATTGCTCTTTAATGCTGGAGTTCCTTCACCCGATGAATCAAAAGCTATTattttacatcctggtccgcgctgtgttccatcaatatttgatcatgataatgggacacatgcaatgctacaatatgaccctgaaggggtttcagatgaaattttacttcctggtccggattgtgtcctatcagtatctgatcatgatgatgtgacgcatgcaatgatactagatgatcatgaaggggtttcaaatgcaactttacatcATGAAGGGGTTTCTAATCGtgatgatgggacacgtgcaatgctattagatgaccatgaagggtcaaatgcaactttacatcctggtccagattgtgtcccatcagatgatgatgggacacatgcaatgctagaagatgacagtgaaggggttacaaatgcaattttacttcctcgtccagattatgtcccatcaCTATCTGATCATCATGGTGGGACACGAGCAGTGCCACAAGTTGACCATGAAGGGGTTTCAAATGTAATTGTTTTAAATCCTAGCCAGGATTGTGTCGCATCAACGTCTAAGCATGATCATGGGGCTCCTAAAGTGCGGAAAGCTAGGAAGAAAGACAAGTTACCAATTGAGCAATATGACCCAAGAATCGTTGCCCGGTTTGAGAAGCGGCAGTTCTATCACTCTCACAAATACCAGCCTATGGCACTTGAAGAAGCGCTATTAGATGAAGATAGTGAGGATGAAATGAATGAGGGTGCTCAGGAGATTGAAGATCGAAGGAGACTTGCTATTCTTGATGCGCCAGACCATGTGAAAGAGTTCCTATCTCTGTGGAACGCATTTATTAAGAAACATCGTGGCAGAGTGCTGGCAGATGGTCACATAAATTGGGCTTGTGAAGCTTTCACAAAATATCATTCTGCTGAGTTTGCCCAGTCCAACTCGTTAGCCTGGAATTGGAGAATGTTTATGATCAAACTAATTAATCAGGGTCTTCTAAAGACATCGACCTTCGTTGCATGCAATAATATTCTCGAACAATGCCGGAAgcagaaccaagatccccaaaggcagaatcaagatccccaaagCTAA 2433 0.3362 MATFGFQAMAHCLLLRRISQLSRFRSMPDIPGTSSARMAASETNSRRTGQRNNRVVWENLSEEEKLAAIESLTVYCRPIELYNIIKSRTKKKPLYLRRCMDYHIKAKRKKRLVLTASLSWKDDDNRALFPLCVCLGRLDPNTEARSAQRYHVGKISSFKGLSGVDGKGNTQLEVNFMLPEFDKLAGEVSTAKYWFLVFASAGNPISLSRANSSPWPVEVSSNESWGGERCLYGKVSLNFHQDNGNVFPYFLLRKPGKIKIEMNLHPCILTYHLQYCIQRKSKIISIQDSRNSKAKLEQFEVSFCLEEFGAREKSSSQTNTSTEVSWIPPSSSQILWSKEGNVVFCYRYYNNKLHRTEVTENFSCTICLDRCASYKGLKCHLQSSHDGYFNFEFSNSEDFPFVFLSVKTVISTIKDVGAGINPRLQTFLYCAKRLKHREPTRGRTNETDRLLFNAGVPSPDESKAIILHPGPRCVPSIFDHDNGTHAMLQYDPEGVSDEILLPGPDCVLSVSDHDDVTHAMILDDHEGVSNATLHHEGVSNRDDGTRAMLLDDHEGSNATLHPGPDCVPSDDDGTHAMLEDDSEGVTNAILLPRPDYVPSLSDHHGGTRAVPQVDHEGVSNVIVLNPSQDCVASTSKHDHGAPKVRKARKKDKLPIEQYDPRIVARFEKRQFYHSHKYQPMALEEALLDEDSEDEMNEGAQEIEDRRRLAILDAPDHVKEFLSLWNAFIKKHRGRVLADGHINWACEAFTKYHSAEFAQSNSLAWNWRMFMIKLINQGLLKTSTFVACNNILEQCRKQNQDPQRQNQDPQS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01878 810 ProSitePatterns Zinc finger C2H2 type domain signature. 364 385 IPR013087 -
Gma10g01878 810 Pfam VEFS-Box of polycomb protein 653 789 IPR019135 -
Gma10g01878 810 PANTHER POLYCOMB GROUP PROTEIN 57 803 - -
Gma10g01878 810 MobiDBLite consensus disorder prediction 631 650 - -
Gma10g01878 810 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 57 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01878 Gma-Chr10 45972284 45987414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01878 649 793 C2H2 Transcription Factor Family AT5G51230 47.945 6.23e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01878 - - gsj:114370878 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01878 10 45972284 45987414 Gma10g01878 10 45972284 45987414 ECH