Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01862 ATGTCGGATGCACCGGCGAGTCCGAGTCACGAGAGTGGTGGCGAGCAGAGCCCTCGCGGCTCGTTGTCCGGCGCGGCTAGAGAGCAGGACCGGTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGCTCTGCCTCCCAATGGCAAGATTGCGAAGGATGCAAAAGACACAATGCAAGAATGCGTTTCTGAATTCATCAGCTTCATTACCAGCGAGGCGAGTGAGAAATGCCAGAAGGAGAAGAGAAAGACAATCAATGGAGACGATTTACTATGGGCCATGGCAactttagggtttgaagactacattgagccgcttaaggtgtacctggctaggtacagagagGCGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTTGCAGGTGCAACCACAACATCTGGTTATGCCTTCAATGCAAGGCCATGAATAG 525 0.4571 MSDAPASPSHESGGEQSPRGSLSGAAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEGDTKGSARSGDGSARPDQVGLAGQNAQLVHQGSLNYIGLQVQPQHLVMPSMQGHE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01862 174 SUPERFAMILY Histone-fold 29 142 IPR009072 GO:0046982
Gma10g01862 174 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma10g01862 174 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Gma10g01862 174 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Gma10g01862 174 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Gma10g01862 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 154 - -
Gma10g01862 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma10g01862 174 Gene3D Histone, subunit A 22 153 IPR009072 GO:0046982
Gma10g01862 174 MobiDBLite consensus disorder prediction 1 28 - -
Gma10g01862 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Gma10g01862 174 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01862 Gma-Chr10 45837451 45841813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01862 9 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.050 4.02e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma10g01862 CBFD_NFYB_HMF 8.8e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01862 K08065 - gmx:100815883 350.517