Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01857 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGATTGACATGGACGCAGACGCCGAGCAACAAGATGAGCAACTTGCCCCCAATCACACAAACAAGGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTTCGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCGGGCACTTCCGCAACTCAAGCTGAAAAGGAGGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCCGTGCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAATATTTTGGAAGAAGACCTGCTGGTTTCCGATCTAGGAGGCCTTTCATGTCTGCTCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 645 0.4822 MEQEEHEVYGADIPDEEIDMDADAEQQDEQLAPNHTNKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPAGFRSRRPFMSAPFFPPYGYGRVPRYRRPTRYRPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01857 214 Gene3D - 12 172 IPR012677 -
Gma10g01857 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Gma10g01857 214 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 213 - -
Gma10g01857 214 SUPERFAMILY RNA-binding domain, RBD 80 188 IPR035979 GO:0003676
Gma10g01857 214 MobiDBLite consensus disorder prediction 32 46 - -
Gma10g01857 214 MobiDBLite consensus disorder prediction 66 86 - -
Gma10g01857 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Gma10g01857 214 MobiDBLite consensus disorder prediction 1 46 - -
Gma10g01857 214 CDD RRM_II_PABPs 91 162 - -
Gma10g01857 214 Coils Coil 33 67 - -
Gma10g01857 214 MobiDBLite consensus disorder prediction 1 26 - -
Gma10g01857 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Gma10g01857 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01857 Gma-Chr10 45791554 45796075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01857 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.53e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01857 K14396 - gmx:100527139 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01857 10 45791554 45796075 Gma20g01853 20 45921124 45927356 GST