Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01853 ATGGAAAATTCACGCGTCCAGCAGCAGTTCACCAAGCACAATGGCTCCAAAAATACAAgcagatggaactctgttgctaggcttgcagGACTGAAAAGAAATGGGAAAAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCAAGAAGGGTCACATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATAAAGAACTATTGGAGGACTCACTTCAAGAAAAAGACTAAAACCCCCTCTGATGCTgctgagaaggcgagaatccgttcctcgaggaggcaacaatttcaacagcaacagcagcagttgaagcagcagcaggttcagcagcagcaacaacaacaacaacaattccaattcaacTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATAACCATAGAGTGCCTTCTATATCTCAAGAGGCACAAGAAATGGCCAGCATGTACCCTAACACTTCAGAACAGCAGGACTACTTCTACTCTATGTTCAATGTCAATGACAATAATGTCTCTGCACCTGAGTGCTTAAACGAAGAAATTTTGTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTGCCACAAGCAAAGCTAGTTTACATAATTTAGTTGCTCCTTTCTGTTAA 729 0.3333 MENSRVQQQFTKHNGSKNTSRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGHITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKTPSDAAEKARIRSSRRQQFQQQQQQLKQQQVQQQQQQQQQFQFNLDMKGIINLLEENNHRVPSISQEAQEMASMYPNTSEQQDYFYSMFNVNDNNVSAPECLNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVAPFC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01853 242 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 235 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma10g01853 242 SMART sant 51 99 IPR001005 -
Gma10g01853 242 SMART sant 3 48 IPR001005 -
Gma10g01853 242 PANTHER MYB TRANSCRIPTION FACTOR 19 235 - -
Gma10g01853 242 Gene3D - 2 51 - -
Gma10g01853 242 Gene3D - 56 100 - -
Gma10g01853 242 SUPERFAMILY Homeodomain-like 32 103 IPR009057 -
Gma10g01853 242 Pfam Myb-like DNA-binding domain 20 46 IPR001005 -
Gma10g01853 242 Pfam Myb-like DNA-binding domain 53 96 IPR001005 -
Gma10g01853 242 ProSiteProfiles Myb-like domain profile. 1 46 IPR001005 -
Gma10g01853 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Gma10g01853 242 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Gma10g01853 242 CDD SANT 56 97 IPR001005 -
Gma10g01853 242 Coils Coil 118 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01853 Gma-Chr10 45767708 45770804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01853 2 242 MYB Transcription Factor Family AT4G13480 48.473 5.04e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g01853 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01853 K09422 - gmx:100813935 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01853 10 45767708 45770804 Gma10g01853 10 45767708 45770804 ECH
Gma10g01853 10 45767708 45770804 Gma20g01860 20 45947157 45948489 GST