Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01838 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACGACGGAGGACAAGCTCAAGGAGCATTTCGGAAACTATGGCGACGTTTTGAGCACCTCCGTCATGCGGGAGAAGAACACTGGGAAGCCTAGGGGCTTCGGTTTCGTCGTTTTTGCGGATCCTAACATTCTAGATAGGGTTTTGGAAGACAAACATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCAAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGAGGAAACATCAGGACTAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTTCGCCAGTACTTTGAGTCTTATGGGAATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGGGGATTTGGGTTTATTTCATTTGATACTGAGGATGCGGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGGGCAAGTGGTCGTATGATGGGTGGTGCTGGAGGTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTACAGTGCTCCTGGGTATGGGTATGGTCCAGCTAGTAATGGCATTGGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTACATGGCCTGCTCAGGCTCCTTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTGCTTGGGGTGCTCCAAGTGGTGGTGCTGGCTCTGGTGGCGGTGGTCCTGGTTCAGCAACTGCAGGTCAATCTCCTGGTGGAGCTGCTGGATATGGGAATCAAGGTTAtggatatggtgggtatggtggatatggtggaAGTGATAGTTCTTATGGGAATTCTGGTGCATATGGTACTGTTGGCGGACGTACTGGAAGTGCTCCAAACAATAATGCTAGTGCTTCTGGTGGTAGTGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGTGGGGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGGACTCCTCAAGGTAATGGTGGGCAAGTTGGTTATGGTGTTGGCTATGGGGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1416 0.471 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPASNGIGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGGPPGGPRSTWPAQAPSGYGSMGYGNTAAWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSGAYGTVGGRTGSAPNNNASASGGSELTSSGGSGNYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGVGYGGAQSRQAQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01838 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Gma10g01838 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gma10g01838 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 469 - -
Gma10g01838 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma10g01838 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma10g01838 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gma10g01838 471 MobiDBLite consensus disorder prediction 428 450 - -
Gma10g01838 471 Gene3D - 107 229 IPR012677 -
Gma10g01838 471 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Gma10g01838 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Gma10g01838 471 MobiDBLite consensus disorder prediction 390 471 - -
Gma10g01838 471 MobiDBLite consensus disorder prediction 390 413 - -
Gma10g01838 471 MobiDBLite consensus disorder prediction 84 107 - -
Gma10g01838 471 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Gma10g01838 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma10g01838 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Gma10g01838 471 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01838 Gma-Chr10 45661094 45664319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01838 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.876 3.37e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01838 K14411 - gmx:100811267 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01838 10 45661094 45664319 Gma10g01838 10 45661094 45664319 ECH
Gma10g01838 10 45661094 45664319 Gma20g01880 20 46084768 46087272 GST