Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01816 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGTGTCACAACATGGGTCACAACCACAAGCACTTTCACCAATCACAAGTCCAGGGAGTTCAATCTTTCATCCACATCAACATGCTTCGAGCACCAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACAGCATTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCATCGAATTGATGTTCTGAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCACCACCAACATACTCACCAGCCACAGATACTCGTGGACTAGATGAGGCACTGATCCGGTTAATCCCAGTGACTCAATACAAAGCACAACAAGGGGATGATAGAGACTTTGGAGAGAGAAGATTCTGCGAATGCGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTGAGGGTTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATTGATCAGCTTCTCACCCTAAGGCCTTCTTCTTCTTCTTACCCTCATGATCAAACCCCACCTAGGGAAAACCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAGTGATCATGATAGAAGCCAGAATTTGCAAGAAAGAGGCAATGCTTTGGAGTTACCAACATGTCCTATTAGTCCTTCTTCACCAAGGAAGCTATTGGAACATAGAAATGTGCAGAAGAAGAAAGCAATGAAACTGCAGAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGACCAGTTTTTCTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACGGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGAATCAGAACTGGCAAGTCAATGAGGTCAACTCCATTGAAGGTTGCAGTGGAATTGGTAGTAGAGCTAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGACCCCTGA 1104 0.4321 MDLVSRRYLIYVSQHGSQPQALSPITSPGSSIFHPHQHASSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPPPTYSPATDTRGLDEALIRLIPVTQYKAQQGDDRDFGERRFCECAVCLNEFQEDEKLRVIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHIDQLLTLRPSSSSYPHDQTPPRENLIGGDEDFVVIELGSDHDRSQNLQERGNALELPTCPISPSSPRKLLEHRNVQKKKAMKLQKVTSMGDECIDIRAKDDQFFSVQPIRRSFSMDSSGDRRFYLAVQEALRNQNWQVNEVNSIEGCSGIGSRAKRSFFSFGHGSRSRSSVQPVSLDP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01816 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
Gma10g01816 367 SUPERFAMILY RING/U-box 120 185 - -
Gma10g01816 367 PANTHER RING-H2 FINGER PROTEIN ATL16 27 366 - -
Gma10g01816 367 CDD RING-H2_PA-TM-RING 136 179 - -
Gma10g01816 367 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Gma10g01816 367 SMART ring_2 137 178 IPR001841 -
Gma10g01816 367 Pfam Ring finger domain 136 179 IPR001841 -
Gma10g01816 367 PANTHER RING-H2 FINGER PROTEIN ATL16 27 366 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01816 Gma-Chr10 45418357 45420006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01816 35 367 C3H Transcription Factor Family AT1G04360 49.724 1.34e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01816 - - gmx:100794749 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01816 10 45418357 45420006 Gma20g01900 20 46287159 46288482 GST