Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01788 ATGAGAGCTAAGAGTTTGATAAGTAAGAAGCAGATTAGTACAAGATTAAGAAAAATGATAAAGTGTATATGTTCGAGGGAGCAGTTAAGAGTGGAGGAGTTGAGTTACTCATCAGAGTCACTGGCAACGAGGGACTATTCGGCAAGTGGTGGTTTATCATCTCGACCTGGTGAAATCGACCCAAAGGTTGATAATACCAACATTGAAGAAGCAGAGTCCTCTCTCCGTGAAAGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATATCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTGCTGTCATTCCCAAGTTGAAAGTTTCTATATCTAGAAGATGTGAACCCAATAAACGCCGTTCGCAAAGTGATGCAATGCCTCCTATGTCAATGCACGCTGTTAGTTTACTTCTTGAAGCTGTCTTTCTCAAGGCAAAATCGTTTCAGGCTCTTGGAAGGTTTCAAGATGCTGCTCAGTCATGCAAAACTATATTAGACACTGTTGAATCTGCTTTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAACTACAAGAGACAGTGGGAAATGCTGTTGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACATTATGTCATCCTATAGGAGGGCCTTGCTTTATCATTGGAATCTTGACATTGAAGCCACTGCAAGAATTCAAAAGGAATTTTCTTTTTTTCTTCTGTATAGTGGTTGTGAGGCAAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATCTATTCTTGGATACATTGCATGGGACCCTTCATTGCTTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCAAGACTCTAGCTCAACAGATTGAGGAATTGCTTCCTGAAAGCATGGAGAGAAAAGAAAGATACTATACTCTAGCTCTTTGTTACTGTGGGGAAGGTGAACATATCACTGCTTTGGACCTTCTGAGGAACTCTTTGAATCATAGAGAGAACTCAAACTGCATAAAGGAATTGCTTCTAGCTTCAAAAATTTGTGCTGACAACAAGGTTTGCGTCGAAGAAGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTTAATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTACTAGGTGTTCTGCTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGAGAAGGTTTTTATGCAGTCAGAAGCACTCAGTGCTCTAAAAGCTGCTGAGGGAATGATGAGAGAAAGTGATCCTTACATCGTCCTTCATCTTTGTCTAGAATATGCTGACCAGAGGAAGTTAAGCATTGCTCTTGATCATGCAAAGAAACTGATTAAGCTTGAGGATGGATCTAGTGTTAGTGGATATATTCTATTAGCACGGATTTTATCAGCTCAACAAAAGTTTGTAGATGCAGAACTTGTTATAGATGCTGCTCTAGATCAAAGTGGCAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTACGGATTGCACAAGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTTCAAAATAAAAGTTTAGGCACAGCAAGTAAGGTTGTGAAGAATAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCTTGATTTAGCCAATGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTCGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAAGGTTTGCTTTCTGAGGCCAGAGGTTTTCATCAAGAAGCTTTGAAATCATTTAGGAAAGCATTAGATATTGAGCCAAACCATGTACCAAGTTTGATATCCACAGCCTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGACGCACTACGCCTTGACAGAACAAACCCTTCTGCTTGGTACAATCTTGGACTGCTCTACAAAGCTGATTTGGGGACATCAGCAATGGAAGCTGTTGAATGCTTTGAAGCAGCAGCTCTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2193 0.4099 MRAKSLISKKQISTRLRKMIKCICSREQLRVEELSYSSESLATRDYSASGGLSSRPGEIDPKVDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKLKVSISRRCEPNKRRSQSDAMPPMSMHAVSLLLEAVFLKAKSFQALGRFQDAAQSCKTILDTVESALPEGWPENFVSDCKLQETVGNAVELLPELWKLAGSPQDIMSSYRRALLYHWNLDIEATARIQKEFSFFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSILGYIAWDPSLLDHLSFALSVSGEFKTLAQQIEELLPESMERKERYYTLALCYCGEGEHITALDLLRNSLNHRENSNCIKELLLASKICADNKVCVEEGIKYSCKAISQFNGKCMQMVAIANCLLGVLLSSKSRSAASESEKVFMQSEALSALKAAEGMMRESDPYIVLHLCLEYADQRKLSIALDHAKKLIKLEDGSSVSGYILLARILSAQQKFVDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKVVKNKGNRDRRLEMEIWLDLANVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLLSEARGFHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLYKADLGTSAMEAVECFEAAALLEESSPIEPFR 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01788 730 SMART tpr_5 151 184 IPR019734 GO:0005515
Gma10g01788 730 SMART tpr_5 493 526 IPR019734 GO:0005515
Gma10g01788 730 SMART tpr_5 619 652 IPR019734 GO:0005515
Gma10g01788 730 SMART tpr_5 585 618 IPR019734 GO:0005515
Gma10g01788 730 SMART tpr_5 689 724 IPR019734 GO:0005515
Gma10g01788 730 SMART tpr_5 336 369 IPR019734 GO:0005515
Gma10g01788 730 PANTHER PROTEIN NPG1 11 730 IPR043376 -
Gma10g01788 730 Gene3D Tetratricopeptide repeat domain 584 727 IPR011990 GO:0005515
Gma10g01788 730 PANTHER OS10G0471400 PROTEIN 11 730 - -
Gma10g01788 730 Pfam Tetratricopeptide repeat 620 652 IPR019734 GO:0005515
Gma10g01788 730 Gene3D Tetratricopeptide repeat domain 85 583 IPR011990 GO:0005515
Gma10g01788 730 SUPERFAMILY TPR-like 530 700 IPR011990 GO:0005515
Gma10g01788 730 SUPERFAMILY TPR-like 152 549 IPR011990 GO:0005515
Gma10g01788 730 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Gma10g01788 730 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01788 Gma-Chr10 45077548 45082631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01788 10 730 Calmodulin-binding Proteins AT4G28600 53.469 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01788 K21843 - gmx:100789469 1408.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01788 10 45077548 45082631 Gma10g01788 10 45077548 45082631 ECH