Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01763 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTATCAGCAAGTCAGTTATGGGAACGCCGAAGGAATCAAAACCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCGGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATATCAATGCATTTCGTCCTGGTCGTCATGGTGGGACTCCACTGCATCATGCAGCTAAAAGGGGCTTTGATAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGACCAAAGGACACAGCAATGTTGTTCGTACAATTGAGAGTCATCTATGCTTGTTCTCTGGTTGGCTGTGCGAGTTTCATGGACCTGGGTTTCTAGAAGTACTAGCTCCTCAGTTGGTATCAAAAAAAGTTTGGGTGGTTGTTTTGCCAGTTGGCTCCCGTACTCTTGCCAAGCCTTACAAGTTGGAGCTTGCCATATATTCTAGGTTGCAGGACGCACAACCACGTACCGTTATTGGACTGTGGAATGCCAATTTACAAGATCCAAAGCTTCACCAGTCTGATCCGTCAGTGACAGTTGTTGATCGCATTACTAAAACACGCGTTAAACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAGTCCAGCATTCTTGCAAAATAACGTGCCTACAGGTCCACCCACAGCACTACCAGTTGCAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCCTTTTCTGATACACAGCCAAGCTTTGAAGCAAGCTCTTCAAGCAGTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATCCTAATACAAGTGATAGTGAGTTGGTACAAGAAGCTAACCCAGATGGCAATACTCAGCACCTCCAAAGCCACGTGAATGCTAGTGCTTTGGACTTGAATCCATCAGCTCCACCAATCGCCAATGAGATTCTGGCAGATGGTCCCATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATGGCATCTCCAGATGCTGAGAAGCTTCCTAAAGGAGAAAAAAATGCCGGTGGAAGTGGTTCATCATGCGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAAGTCATAAAGCTATATCATGTTTGA 1371 0.4573 MGQGQSKDELLYQQVSYGNAEGIKTLHREGAGLEWRDKDAKTPLIVACMNPRLYNVAKTLIELGANINAFRPGRHGGTPLHHAAKRGFDSIVKLLLLHGANPLVLNDDCLTALEVARTKGHSNVVRTIESHLCLFSGWLCEFHGPGFLEVLAPQLVSKKVWVVVLPVGSRTLAKPYKLELAIYSRLQDAQPRTVIGLWNANLQDPKLHQSDPSVTVVDRITKTRVKLGPASENDKQQLTWFSNACKGIPQVSPAFLQNNVPTGPPTALPVAEDTELAMAISASLQSAMQERPPFSDTQPSFEASSSSSAVNTGNHGFLGTPNPNTSDSELVQEANPDGNTQHLQSHVNASALDLNPSAPPIANEILADGPIQYPSIDLSPVDMASPDAEKLPKGEKNAGGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQVIKLYHV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01763 456 ProSiteProfiles Zinc finger RING-type profile. 405 444 IPR001841 -
Gma10g01763 456 SMART ring_2 405 443 IPR001841 -
Gma10g01763 456 SMART ANK_2a 39 69 IPR002110 GO:0005515
Gma10g01763 456 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gma10g01763 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 455 IPR013083 -
Gma10g01763 456 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Gma10g01763 456 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Gma10g01763 456 Gene3D - 3 144 IPR036770 -
Gma10g01763 456 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Gma10g01763 456 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Gma10g01763 456 SUPERFAMILY RING/U-box 404 450 - -
Gma10g01763 456 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Gma10g01763 456 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 456 - -
Gma10g01763 456 Pfam Zinc finger, C3HC4 type (RING finger) 403 450 - -
Gma10g01763 456 MobiDBLite consensus disorder prediction 287 342 - -
Gma10g01763 456 PANTHER ROLLING PEBBLES, ISOFORM B 1 456 - -
Gma10g01763 456 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01763 Gma-Chr10 44840894 44846329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01763 397 453 C3H Transcription Factor Family AT3G06140 33.333 1.90e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01763 - - gmx:100789309 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01763 10 44840894 44846329 Gma10g01763 10 44840894 44846329 ECH