Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01754 ATGACAACTATGCTGACAAATGAGCATGGTCTGAGTTTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTTTGCCTGGCGGGGGCTCTGAAGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACCGTTGATCTGAAGCTTAATCTTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCAGTACAGAAGGTTAGCAATGAGGAAGTAGCTGAGAAGACAACAAGCAGCACTATTGCTAATTCTGGGGCGTTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGCCTGCGAATAATGAAGGGATCAGAAGCGATTGGCCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 720 0.4764 MTTMLTNEHGLSLNLKETELCLGLPGGGSEVETPRATGKRGFSETVDLKLNLQTKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSNEEVAEKTTSSTIANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01754 239 Pfam AUX/IAA family 36 230 IPR033389 -
Gma10g01754 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 232 IPR003311 GO:0005634|GO:0006355
Gma10g01754 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Gma10g01754 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 9 232 - -
Gma10g01754 239 SUPERFAMILY CAD & PB1 domains 114 220 - -
Gma10g01754 239 Coils Coil 48 68 - -
Gma10g01754 239 Gene3D - 115 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01754 Gma-Chr10 44747726 44750412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01754 104 229 B3 DNA Binding Superfamily AT4G23980 32.540 8.19e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma10g01754 AUX_IAA 1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01754 K14484 - gmx:547949 479.559