Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01748 ATGGCAGCAGGATTGGAACTCATACCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTCTTGAAGACGGCTCATGCAGCATCTGATGTTCTTATTGGTAAAGAAAGCTTCAAGGCCCTTTCGACACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAACAATTTGGTTGACAAGTATAGGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTACAAAATGAGATGCAAAGGGAGAAGTTTGAGGCTTCACAATCTCAGATTCAAATTGTTGACAAGTTGAACCAGGCACTTAAAGAACAGAAACATGATCAGGCTTTTGCGAACGACATGCTAAAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTTCCATCCGGAAAGAAAGAGCTGAATGTGTTCTTTTGGACCAGATCATTCAGTTACTCTCTCGGGCTGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCGGTACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAACATATCCCTCCACTCAATCCTTTCCATTGTTCTATAACCAGGAATGTTATGGTAGATCCTGTTAGCCTTTGTACCGGTACTACATGTGAACGATCTGCTATTGAAGCTTGGTTTTGTGATGGCAACAGGACAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGGTCATAAGGTCTATTAGGGAAAACTTGTTATCATATTCTGACCTGCAAGAATCCCTGAGCCAAATGCAGACTCTAGTAAGAGAGAATTCGATTAACAAGGATTGGATTTCTATAGCAGAGCTTACTGACATTGTGATCTCTATCCTTGGGAGCTCTGATGACAGAGAAGTGAAGATGAAGATTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATAACATTATTTCCTGCTTAGGGAGTGACTCTAGCACTTCAAAGGCAGCTATTGATTTGCTACATGAGTTGCTTCAAGAACAATCCGGGTGGAATGAATGTCTCTGCAGAAAGCTTTCTGAAAATCGCACTGCAGTTCAGTTCCTTGTTGCCCTTCTGAAGAATCATGTCAATCATTCTGCTGAGGTTGCAGAAAACATTTTGATGAATCTTTTTGAACTAAATGATGAAACCATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGACCAGATTCAAGAATATCAATGACAAAAGCCATAGTTAATTTGGAGTTGAAGGATCCAAACTTAAAACTCCTTGGCAAGGAAGGAGCTATACCTCCTTTGCTAGAAATGCTGTCAGGCAATATTGAATCAAAAGACTTGTCGTTATCAGCCCTGGTTAAATTAGCAGGATCTCATGCCAATAAGGGAATTATTGCTGCATCTGGAGGAGTCCCTCTTATTATAGATTTAATGTTCTCTCCTCAGTCACGGACACTAATTATCATTAAATGTTCTGAAATCATTGAGAAGCTTTCTTCTGATGGTGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTGGATTCCATCATCGCCAATTTGCTAGCTTTGCAGCAGACTTCCAACTCAGGTCACAACATCCGTAAGCCTGCACTGAGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTCCCACTCCTTGATGATTCTGACTCAGAAATCAGGGAGACTTCCATAATTCTGCTCTTTCTTTTCTCTCAACATGAGCCGGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAAGAAAATGCCAATGTGCAGATAGCTGCTGCTGGTTTACTGGCTAACCTGCCAAAATCCGAAAGAGAACTCACTATGAAGTTGATTGAGTTGGGTGGACTCGATGCAATCATAAGCATTTTGAAAACTGGGAAAATGGAAGCAAAAGAAAATGCTCTCACTGCACTCTTCAGGTTCACAGACCCTACAAATATCGAGTCACAACGAGATCTGGTTAAGCGCGGAATATACCCTTTGCTTGTAGATTTTCTCAACACTGGTTCAGTCACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAACTCACAGTTGTTCCCAAACCAACTGGTTGCTGGCTTTTCAGATCATCGCGTGTTCCGTTATGTTCAGCACATGGGAGTGTATGCAGTGTGAACACCACATTTTGTCTTTTAGAAGCAAAGGCTTTACCTGGCTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTGTGAAGCAATACAAACACTCTCCACATTGGTTTTGGAAGATTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAATATAATGCAATAAGGTCCATAATGGACATTTTGAACTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCTAGATCACGTTTAATTGGTCTCACTGGCATGAATATATATGGGGATGGACACCTTAGGAGAAAAGCTGCCAAGGTACTATCATTGCTTGAACGCTACTCAAAGTCATCATCATCTGCAATCTCAGGAGTTCCGGAGTGA 3045 0.4151 MAAGLELIPIGTILTVVTNQVLKTAHAASDVLIGKESFKALSTHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVDKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQREKFEASQSQIQIVDKLNQALKEQKHDQAFANDMLKEIARAVGVPVEPSEISKELASIRKEKEEASIRKERAECVLLDQIIQLLSRADAARDYEEVERRYFERVKVIERYDSREKHIPPLNPFHCSITRNVMVDPVSLCTGTTCERSAIEAWFCDGNRTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVIRSIRENLLSYSDLQESLSQMQTLVRENSINKDWISIAELTDIVISILGSSDDREVKMKILITLKDAVEGNTRNKEKVAESQGWDNIISCLGSDSSTSKAAIDLLHELLQEQSGWNECLCRKLSENRTAVQFLVALLKNHVNHSAEVAENILMNLFELNDETITIAANFGWYKPLVDRMIQGPDSRISMTKAIVNLELKDPNLKLLGKEGAIPPLLEMLSGNIESKDLSLSALVKLAGSHANKGIIAASGGVPLIIDLMFSPQSRTLIIIKCSEIIEKLSSDGDGIDFFVDGEGKQLELDSIIANLLALQQTSNSGHNIRKPALSALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEENANVQIAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALTALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCSAHGSVCSVNTTFCLLEAKALPGLIKLLHGEVHATACEAIQTLSTLVLEDFPQRGARVLHEYNAIRSIMDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVPE 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01748 1014 SUPERFAMILY ARM repeat 358 721 IPR016024 -
Gma10g01748 1014 Coils Coil 198 218 - -
Gma10g01748 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 335 IPR013083 -
Gma10g01748 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1011 - -
Gma10g01748 1014 Gene3D - 517 846 IPR011989 -
Gma10g01748 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1011 - -
Gma10g01748 1014 Coils Coil 63 90 - -
Gma10g01748 1014 SUPERFAMILY RING/U-box 250 331 - -
Gma10g01748 1014 Gene3D - 348 506 IPR011989 -
Gma10g01748 1014 SMART arm_5 407 446 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 575 617 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 800 840 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 535 574 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 671 711 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 873 913 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 713 755 IPR000225 GO:0005515
Gma10g01748 1014 SMART arm_5 757 797 IPR000225 GO:0005515
Gma10g01748 1014 Gene3D - 856 1009 IPR011989 -
Gma10g01748 1014 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Gma10g01748 1014 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Gma10g01748 1014 SUPERFAMILY ARM repeat 634 1002 IPR016024 -
Gma10g01748 1014 Coils Coil 128 155 - -
Gma10g01748 1014 Gene3D - 9 125 IPR036537 GO:0007166
Gma10g01748 1014 Pfam U-box domain 266 330 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01748 Gma-Chr10 44648935 44654635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01748 266 969 U-box Gene Family AT1G20780 28.154 6.93e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01748 - - gmx:100783638 1935.61