Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01721 ATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTCAGCGTGATGGATGTTTCAAAGAAATATGGGATAGAGTATCGCTTGCTTCATGCCATTATGAAGGGACATCCATGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGCAGCTACTGTCTTACACATGAATCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCACCTTTTCCCAGGGAAAGATGCCTGACTCTCGTGTGCAGGATATGATCAAATATTACCAATCTTTGTCAGAACACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCACAAGACTGCATCAAATGTTGATGAGACAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATATCTTGGGATAAGAGTGACATTGAACGTGTGGAGCAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGCGCAGCCTCCAAGTTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGGAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGAGTTGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCAAACAATAATTCTTCAGGCTCGAAGTATCCATCTGAAGAAAATCTCCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGTAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAATCCTGAGATGTTGCCATTGTCAGACTCGCAGATGTTTCGCCTCTCATGTCATGTTGAACTTGTAGATGAGTTTGAAGATTCAGAAGCTATAACTCCACCAGAATTAATTGTGCTGCCCCTGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTCCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTACATGGCTATAGCGGTGTCGACGATTCCACCCTGGTCAAGCTCTTGTTAGGATCGAGAGATGTAGTTTGTGTCCGAGGAAGATGCATTGGGAAAAATGGGTTGAGCAAGTTCCGAATGGAACGTGGACTTGAGAGGTGGACGGTAGATTGCAGCTGTGGAGCCAAGGATGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGACACACCAGGTGTTCTGACATCCACGACACTGATCCTGTTCCAGCACGTTTTGTTTGCCAGAAATGCCAACACTCTGAATCAAAACTCAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTAGTGGTAGTAGTTGCTTCAGAAACGGCTTGCCAGTGCCATCTGATGTTATTTAA 1488 0.4435 MDFWDRLCKTLGVRKVSVMDVSKKYGIEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHESYKSAVESLSNLPLSTFSQGKMPDSRVQDMIKYYQSLSEHELVNIRDLFCFIMGLIGDAHKTASNVDETTCKKRRFNASGLSISWDKSDIERVEQAMIRVLRAVSESKWVSWRALRGAASKLGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRVEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLVMSSAQKLFDCKQFVKDYNPEMLPLSDSQMFRLSCHVELVDEFEDSEAITPPELIVLPLNATVAELKNQAANAFQDVYLMFRRFQVDELHGYSGVDDSTLVKLLLGSRDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCQKCQHSESKLKSSGHCKDETVTNVSGSSCFRNGLPVPSDVI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01721 495 PANTHER OS01G0877500 PROTEIN 1 469 - -
Gma10g01721 495 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 469 - -
Gma10g01721 495 Pfam PHD-finger 413 459 IPR019787 -
Gma10g01721 495 SUPERFAMILY FYVE/PHD zinc finger 401 460 IPR011011 -
Gma10g01721 495 SMART PHD_3 412 458 IPR001965 -
Gma10g01721 495 CDD PHD_MMD1_like 412 457 - -
Gma10g01721 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 464 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01721 Gma-Chr10 44371525 44374474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01721 1 459 PHD Transcription Factor Family AT5G22260 28.947 2.39e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma10g01721 PHD 6.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01721 - - gmx:100818189 1021.54