Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01715 ATGCTGCAGATATTAAGCTGGTTACTTTGGTCAAAGATTTCCGGCATCTCTGTCATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGTTTGCTATTGGAGGTTCCGAAAACTTCTACAGTGGATTTGAGGCTGAGTTAGCAGATGTTATTCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATCGTTGGTCGTCTTTGTGTTGGAAACAAGAACGGGCTTCTCTTGCCCCATACCACCACAGACCAAGaaaaaagaaataaaaacgggtcaaaaatggggtatgacaCTGATCAAGTTGCTGTTCACCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCAGGTAATATTCTCGTTGGCAGTTACTGTGTATTCTCCAACAGAGGTGGTTTGGTCCACCCTCACACCTCCATCGAAGACTTGGATGAACTTTCCACACTTCTTCAGGTTCCTTTGGTTGCCGGGACTGTTAACCGTGGTAGTGAAGTAATAGCTGCTGGGATGACGGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAACTTTCAGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCCCAACCTAGTGCCATTGTCGATGAGATGAGGAAATCACTCATTGATACTTATGTCTAA 804 0.4204 MLQILSWLLWSKISGISVMATRLQFENNCEVGVFSKLTNAYCLFAIGGSENFYSGFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQEKRNKNGSKMGYDTDQVAVHRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01715 267 TIGRFAM eIF-6: putative translation initiation factor eIF-6 22 246 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 19 267 - -
Gma10g01715 267 Gene3D - 19 247 - -
Gma10g01715 267 SUPERFAMILY Pentein 19 246 - -
Gma10g01715 267 Pfam eIF-6 family 22 225 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 PIRSF Transl_init_IF-6 19 248 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 CDD IF6 20 245 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 19 267 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 Hamap Translation initiation factor 6 [eif6]. 8 267 IPR002769 GO:0042256|GO:0043022
Gma10g01715 267 SMART eIF6neu2 21 226 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01715 Gma-Chr10 44328671 44336012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01715 19 267 Eukaryotic Initiation Factors Gene Family AT3G55620 85.542 7.49e-161 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01715 K03264 - gmx:100306262 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01704 16 37984529 37987868 Gma10g01715 10 44328671 44336012 PCT
Gma09g01512 09 39880902 39883388 Gma10g01715 10 44328671 44336012 PCT
Gma10g01715 10 44328671 44336012 Gma16g01704 16 37984529 37987868 PCT
Gma10g01715 10 44328671 44336012 Gma09g01512 09 39880902 39883388 PCT