Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01678 ATGGCGTCAATGAACTGGCTGGATTTCTCTCTCTCCCCTCAAGAACTTCCATCACAACCTCTAAATGATGAAGAAGATCACTCTCAAACGGTGACCCCTCTCCTTGGTTTCAACTCCCACGAAATCTCAGTCACCGAATGCTTTGATCTCTCTTCATTTGCCTTAGTAGAAGCACCCAACAGAAACAATACTCATCATATAACTCCTCTAGTACTAAATCAAAGAGACACGTTTTTTCCCCCTTTTTTAGATTATTGGAACACAAAGGGTTTGGGAACTTCATGCAGCAGTAACCAAAACATGGACAATAACCAACAACACCCGAAACTCGAAAATTTTCTTTTGGAAAAACCGGCAACCGGGGGTGGCGGTTGTCCAAAAAACACCAACTCTATAGGGTTGTCCATGATAAAGACATGGCTGAGGAAACAAATGTCATCACAGTCAGATGCTGCAAACACATCACTTTCCATGAGCACTACTAGAGTGTCAGAGTCTGGCACAGTAGCATTGCCCCTTCTAACAGCGGGTGAAGAGAGTTCCTCCTCGAAGAGTAAGCAAAGCGGAATTCTTAATGTTGACACTGTGTCCAGAAAATCCGCTGACACATTTGGAAAGAGGACTTCCATATACCGTGGTGTAAGCAGGCATAGATGGACGGGTAGATACGAGGCTCACCTGTGGGACAATAGTAGTAGAAGAGAGGGGAAAACTAGCAAAGGAAAGCAAGGAGGTTATGATAAAGAAGAAAAAGCAGCTAGAGCGTATGATTTGGCGGCACTGAAATACTGGGGAGCAACGACAACAACAACAAATTTTCCAATTATCCACTATGAAAAAGAATTAGAAGAAATGAAGAACTTGACAAGGCAAGAGTACGTCGCATCACTGAGAAGGAAGAGCAGTGGCTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTAGCAGTCAACAAAGATCTCTACTTGGGAACTTTCAACACTCAAGAAGAGGCAGCAGAGGCATATGACATTGCAGCCATCAAATTCCGAGGACTGAAGGCAGTTACAAACTTCGATATGAACAGATACGACGTTAAGAGCATACTTGAGAGCAGCACTTTGCCCATTGGTGGTGCTGCCAAACGTTTGAAAGATGCTGATGAACAGGTTGACCTCACCATCATGGATCCTCAAACCCCTCACGTGGATTCTAACATCAATATCTTTGGAGCTTCTCACCATTCTCTTGCATTACATCAACCTCAGCCTTATAGCCACTTGAATTACACTTATGGACAAAAGTTTTGGATTGATTCTGCTTCCGTTGATAATAACAATAATAGCTCTGGATCTAACTATGTCATTTATGGTGGTGGAGATGGTTACGCGATTCCCATGGCTACTCCTACGTTCAATATTGCAGATGATGATGATGTTGTTCAAAATAGTAGAAGCAACGGTCTTGAGCATAATGATGTGAAGATGCTTGGTTATGAAAATGTGCTCAGCTCCAGTACCGATCCTTATCATGCAAGGGACTTGTGTTATCTTTCGCAGCCAGCATCTGGTGATACTGTTAAGGGTAGTGCATATGATGCATGCAATACTTGGGTGCCATTTGTGATTCCAAGTACTCTTGCACTAAGGCATACCAATGATCTTTGCTCCGGAGCTTCACCGTTCACATTGTTGCATGAGTAG 1728 0.4346 MASMNWLDFSLSPQELPSQPLNDEEDHSQTVTPLLGFNSHEISVTECFDLSSFALVEAPNRNNTHHITPLVLNQRDTFFPPFLDYWNTKGLGTSCSSNQNMDNNQQHPKLENFLLEKPATGGGGCPKNTNSIGLSMIKTWLRKQMSSQSDAANTSLSMSTTRVSESGTVALPLLTAGEESSSSKSKQSGILNVDTVSRKSADTFGKRTSIYRGVSRHRWTGRYEAHLWDNSSRREGKTSKGKQGGYDKEEKAARAYDLAALKYWGATTTTTNFPIIHYEKELEEMKNLTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAVNKDLYLGTFNTQEEAAEAYDIAAIKFRGLKAVTNFDMNRYDVKSILESSTLPIGGAAKRLKDADEQVDLTIMDPQTPHVDSNINIFGASHHSLALHQPQPYSHLNYTYGQKFWIDSASVDNNNNSSGSNYVIYGGGDGYAIPMATPTFNIADDDDVVQNSRSNGLEHNDVKMLGYENVLSSSTDPYHARDLCYLSQPASGDTVKGSAYDACNTWVPFVIPSTLALRHTNDLCSGASPFTLLHE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01678 575 ProSiteProfiles AP2/ERF domain profile. 310 368 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 478 - -
Gma10g01678 575 CDD AP2 309 368 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 ProSiteProfiles AP2/ERF domain profile. 210 274 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 6 478 - -
Gma10g01678 575 SUPERFAMILY DNA-binding domain 309 369 IPR016177 GO:0003677
Gma10g01678 575 SMART rav1_2 210 280 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 SMART rav1_2 310 374 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 Pfam AP2 domain 310 360 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 Pfam AP2 domain 210 265 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 PRINTS Ethylene responsive element binding protein signature 350 370 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 CDD AP2 209 275 IPR001471 GO:0003700|GO:0006355
Gma10g01678 575 Gene3D AP2/ERF domain 310 370 IPR036955 GO:0003700|GO:0006355
Gma10g01678 575 Gene3D AP2/ERF domain 210 276 IPR036955 GO:0003700|GO:0006355
Gma10g01678 575 SUPERFAMILY DNA-binding domain 209 275 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01678 Gma-Chr10 43894447 43898826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01678 108 477 AP2-EREBP Transcription Factor Family AT5G17430 52.304 5.07e-125 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma10g01678 AP2 3.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01678 K09285 - gmx:100808723 937.947