LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g01676	ATGGAAGGGTGCCAACCTCTTGCTCCTCCCACACAAGACGTTGCTGAACAAGTACACTCCTCCAATGATGCGGAAAAGGTGAAGTTTCGATTTGATCTTAACGCTAAACCTGATGAGGAGGAGGAAGTTAGTGCCAAAGTTGGTGGAGGGAGTGAAACACATGCTGCTGTATCTGAATCAGCTGACAACGTTGGACCTGACAATGGTTTGGAGCTCACTCTTAATAATGATGTTCATCCAACACATGCTGCTGATGACAGTGATTATGAAGAAGACAGAGCCAGTATTGGGGAAGGAGGATCTGACACTGAGAACAGCAGGAAGAGGAAGAGATCTTTGGAGGAATATAAGAAAGGGACTGGGAAGTCTTTCCATGGGGAAACAACAGTGGTGGTGCAATTTGAGAGCAAAAACGAGACCATATTGGATGATGGATATAACTGGCGAAAATATGGCCAGAAGGTTATCAAGGGACATACATACCCTAGGGCCTACTACAAATGCATAAGTGCTGGGTGTTATGTAAGAAAGCACGTGGAACGTGATTCATGCAACAGAAAAATTGTGATTAATACTTATGAGGGTAAACACAATCATGAACAACCACCCCCCAGAAGGAAACGTCACCAGATACAGCTTGTGGATGATGAAGAAGATGAAGACGAAGATGAAGATGATGGCCTAATGACTTTTCAATTTGCTGCGACTGGGAATTTTCTGAATAACCCAAACCCTGCAGAAACTGATCAAGTTCACACACTTCAACTTCGTAATGACATGAATCCTGATCAATTTGCCAATGGGTTTCTGAGTCCCAATAACCATTTTGGAAGTTTCAACAATAATATAAACATGAATATTGGGTCTTCTTCCTACACCCCCCAAATGCATTATTATTCTTCCTTGAATAATACTAAAGCCATGCCTCAAAGCTCCTATGGACTCAACTTTGGCAGTGATGCTGCCCCTCAACCTGGGCCTTCCGGGGTACCAGGTGCAGGAGATAATTAG	1011	0.4342	MEGCQPLAPPTQDVAEQVHSSNDAEKVKFRFDLNAKPDEEEEVSAKVGGGSETHAAVSESADNVGPDNGLELTLNNDVHPTHAADDSDYEEDRASIGEGGSDTENSRKRKRSLEEYKKGTGKSFHGETTVVVQFESKNETILDDGYNWRKYGQKVIKGHTYPRAYYKCISAGCYVRKHVERDSCNRKIVINTYEGKHNHEQPPPRRKRHQIQLVDDEEDEDEDEDDGLMTFQFAATGNFLNNPNPAETDQVHTLQLRNDMNPDQFANGFLSPNNHFGSFNNNINMNIGSSSYTPQMHYYSSLNNTKAMPQSSYGLNFGSDAAPQPGPSGVPGAGDN	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g01676	336	SMART	WRKY_cls	142	201	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	1	111	-	-
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	194	225	-	-
	Gma10g01676	336	PANTHER	WRKY TRANSCRIPTION FACTOR 2-RELATED	8	319	-	-
	Gma10g01676	336	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	8	319	IPR044810	GO:0003700
	Gma10g01676	336	ProSiteProfiles	WRKY domain profile.	137	202	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	19	47	-	-
	Gma10g01676	336	Pfam	WRKY DNA -binding domain	143	200	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	81	111	-	-
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	194	214	-	-
	Gma10g01676	336	MobiDBLite	consensus disorder prediction	314	336	-	-
	Gma10g01676	336	SUPERFAMILY	WRKY DNA-binding domain	139	202	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma10g01676	336	Gene3D	WRKY domain	126	203	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g01676	Gma-Chr10	43876503	43878760	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma10g01676	81	212	WRKY Transcription Factor Family	AT2G03340	41.353	2.40e-27	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma10g01676		WRKY	2.9e-21	CL0274