Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01671 ATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATCTTATCCGGAGCGTCCAGGGGAGCCGGATTGTTCATATTACATGAGAACAGGCCTTTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGTACTATCTGAAGACAGGAACATGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACGCCTGGTCAGCAGTCATATGCTGGAGGAACATACATTCCTAGTCCTCGATGGCAAGGTCCTTCAAGTTATGCGCCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGGTCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAACGGTCAAACATATGGAACTTCTCGTCAAGGTGAGCTTGCAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCACCGTTCCTGTAGGGTTTTATACATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCCGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCACAAGAGAGGCTAGTTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGAAATTTTCTCTCATAATATCTCTGCATCTCCTTCAGCTGATGCCCCAAGCAGGCATCTGTTAGGATCTTCATCTGGAACTGCTGCGTTAAATTTATCTTCCGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGACGGCTTTCATTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATCGATGATGATGGATGA 1266 0.4597 MENNNNNHNLIVPNPQDSLWMMNLRTGETMDSGSYPERPGEPDCSYYMRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYAGGTYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYGTSRQGELAGSQGAYSQFRSGTVPVGFYTLQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPQERLVPAPNCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMEIFSHNISASPSADAPSRHLLGSSSGTAALNLSSEGLVESSSAKPRRLSLSETRQIPSGDDDIDDDG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01671 421 Gene3D - 37 115 - -
Gma10g01671 421 MobiDBLite consensus disorder prediction 388 410 - -
Gma10g01671 421 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Gma10g01671 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 420 - -
Gma10g01671 421 ProSiteProfiles Zinc finger C3H1-type profile. 327 355 IPR000571 GO:0046872
Gma10g01671 421 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Gma10g01671 421 SUPERFAMILY CCCH zinc finger 285 311 IPR036855 GO:0046872
Gma10g01671 421 SMART c3hfinal6 281 308 IPR000571 GO:0046872
Gma10g01671 421 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Gma10g01671 421 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Gma10g01671 421 SMART c3hfinal6 327 354 IPR000571 GO:0046872
Gma10g01671 421 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Gma10g01671 421 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872
Gma10g01671 421 MobiDBLite consensus disorder prediction 224 248 - -
Gma10g01671 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Gma10g01671 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Gma10g01671 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 329 354 IPR000571 GO:0046872
Gma10g01671 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 308 IPR000571 GO:0046872
Gma10g01671 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Gma10g01671 421 MobiDBLite consensus disorder prediction 388 421 - -
Gma10g01671 421 Gene3D - 116 164 - -
Gma10g01671 421 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Gma10g01671 421 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Gma10g01671 421 PANTHER PROTEIN PHOSPHATASE RELATED 13 420 - -
Gma10g01671 421 Gene3D - 273 356 - -
Gma10g01671 421 SUPERFAMILY CCCH zinc finger 330 355 IPR036855 GO:0046872
Gma10g01671 421 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Gma10g01671 421 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01671 Gma-Chr10 43835389 43840457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01671 19 420 C2H2 Transcription Factor Family AT3G02830 59.322 9.15e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g01671 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01671 - - gmx:100802536 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01671 10 43835389 43840457 Gma10g01671 10 43835389 43840457 ECH