Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01621 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAAAAGATGATGGAATGCATCTTGGGGAGCCGTTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAGGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAAATCTTCAGGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCCACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAACATCTTCAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAGCTTTGTGATGAAACCCAGGAGCCAATAAAGACTGAAACTAAGGGGGATTGGGATTTGTTCAATAAAATAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCATTGGGTGTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGGCAATTTAAAAAGGTAGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCAAAAAAGGAAAAGTAAACAACGAGAAATGAGCACACCTATCCTGTTGGTGGAGAACCACATACAGAAACCTTCATCTGTTGATACTTTAAGCCCTGCTATGAAGGAAGGAACTAACAATGATGGGAAAATTGTGTCTGACAATGGCAAGGATACATGTGTGCTTATGGGGGCTGATAACATTAATGTTTTTGATGCCAGCCATCATCTTGACAAAGAAAAACTTACGAGTACTGGTGGTTTGTCAGATGACATTGAACAGAGAGGAATCAAACGTGTGAAAAGTGGTGAGCTTGATGCTGACAATAAAAAGTGTAGAATTGTTATTATTGATAGTGGTAATGAAGCAGAGGTCAGTGAAAATAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTAACAATGGTGGTGATTCTCTTCCTTCGGAGTGTCTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCCCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTGCTTATTAAAAGAAAAGACACATAAAAAGGATATGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAGCAATGAATTAGTTAGTTGTAAATTATGCAAGGGTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGTATGCTGGAATGCAGGACACTAGCTGGCATTGTTGCTCTTGCCATCCAAATCTTTTGCAAAAACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTGATATAATAGTTTCCAGTTCTGGTAGtgattcagatagttcagatgattcagatgactcagatgattcagatgCAAAGGTTAATGTTACAATCAGCTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATACTCGATGATGCTGAATTAGGAGAAGAGACAAAGAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGACAGTTTTCTGCTTCGTCATTTGAAATGAGCTCTGACGGCTGTAATGGGAATTTATCAGAAAGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCCGCTAAACTGAAGGCTCATCAGATTACTGGAATAAGATTCATGTGGGAAAATATAATACAATCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGCGCTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGTCAAGAGTTCATCAAGTGGAGACCATCTGAGTTAAAGCCTCTCAGGGTCTTCATGCTGGAAGATGTATCAAGAGATAGAAGGCCAGAATTGCTTGCAAAATGGAGATCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGGAACTTGTCTTTTGGGAAGCATGTGAAAGATCGACACATGGCTAGAGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCTCTTCAAAACAATCTAATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGAAACCGCTACCAAAATCCTATAGAGAATGGACAGCACACCAATTCAACTCTGACCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAGTTAAAAGGATTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTATCTCCCTTGCAGAGAAAATTGTACAAGAGGTTCCTTGATGTGCATGGGTTCACTACTCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAATCACCCTGGGATCTTGCAGTTGACTAAAGAAGTCAAGGATTATGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGACGAGAATTCTGATTATAATGTACTTGCTGGAGAGAAGATGAGATATGCAAATGACTTGCTGCAAAGGAAAGATGATAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAAATGGTTTTGCTGATGGAAATACTAACTATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTCAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTAGCAAACGAGAGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGTTGGATGGAAGGACTGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGATCATGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAGGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTGTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGTTGATCTAAGTCAAGATAATGAACATCAAGACAACCCAATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGAACTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCAAGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCGAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCAGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATGCCCGAACAGAAGCCAGAAATGCCAATTGCGATGCCCCAAAATGTATCAGAAAGCTGCAGCATCTTGCCAACTAAACTAAGCAGGCGTTTCACGATACGGAAATGCACCAACCTTGCGCATATGTTGACACTTAGAAGTCAAGGAACAAAATTTGGATGCAGTACTGTCTGTGGGGAATGCGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4458 0.4042 MEGKTEDEVVDIESASSGSFNDDSDDEESLVPEKDDGMHLGEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEREAPNVCSTEAWKKRNHWVGSLATAEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPIKTETKGDWDLFNKIVSDGSGIDASFGSKHWVSVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVVKEEDDAIVDRKLQIRLKHRRQKRKSKQREMSTPILLVENHIQKPSSVDTLSPAMKEGTNNDGKIVSDNGKDTCVLMGADNINVFDASHHLDKEKLTSTGGLSDDIEQRGIKRVKSGELDADNKKCRIVIIDSGNEAEVSENKLDCNTQEVKEDLCNNGGDSLPSECLDEKFWCTVCDKVALEVHPHPFLKVITCGDCNCLLKEKTHKKDMGQDCSEGYCTWCGGSNELVSCKLCKGLFCTKCLKKNLGVELYAGMQDTSWHCCSCHPNLLQKLSLQLEKAVGSADIIVSSSGSDSDSSDDSDDSDDSDAKVNVTISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSDGCNGNLSESASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRPELLAKWRSKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRYQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANDLLQRKDDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRSKREKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLVDLSQDNEHQDNPILVGHSLKHTAPHSNGTSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESIMPEQKPEMPIAMPQNVSESCSILPTKLSRRFTIRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01621 1485 Gene3D - 981 1096 IPR027417 -
Gma10g01621 1485 PANTHER RAD54-LIKE 29 1483 - -
Gma10g01621 1485 Gene3D - 696 977 IPR038718 -
Gma10g01621 1485 CDD SF2_C_SNF 1119 1262 - -
Gma10g01621 1485 PANTHER RAD54-LIKE 29 1483 IPR044574 GO:0016887
Gma10g01621 1485 SMART ultradead3 719 940 IPR014001 -
Gma10g01621 1485 MobiDBLite consensus disorder prediction 1 43 - -
Gma10g01621 1485 CDD ADDz_ATRX 482 576 - -
Gma10g01621 1485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 928 IPR014001 -
Gma10g01621 1485 Coils Coil 107 127 - -
Gma10g01621 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 977 IPR027417 -
Gma10g01621 1485 MobiDBLite consensus disorder prediction 598 620 - -
Gma10g01621 1485 SMART helicmild6 1154 1251 IPR001650 -
Gma10g01621 1485 Pfam SNF2-related domain 745 1046 IPR000330 GO:0005524|GO:0140658
Gma10g01621 1485 ProSiteProfiles ADD domain profile. 470 602 IPR025766 -
Gma10g01621 1485 Gene3D - 1000 1077 - -
Gma10g01621 1485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1131 1299 IPR001650 -
Gma10g01621 1485 Coils Coil 1367 1387 - -
Gma10g01621 1485 Pfam Helicase conserved C-terminal domain 1127 1251 IPR001650 -
Gma10g01621 1485 Gene3D - 1109 1340 IPR027417 -
Gma10g01621 1485 Coils Coil 49 76 - -
Gma10g01621 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01621 Gma-Chr10 43307049 43345343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01621 753 1304 RAD5 or RAD16-like Gene Family AT5G43530 25.472 1.08e-30 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma10g01621 SNF2_N 3.8e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01621 K10779 - gmx:100794911 2860.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01621 10 43307049 43345343 Gma10g01621 10 43307049 43345343 ECH