Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01603 ATGGTGTCAAGTCAGCTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTTCAAAGATGCCACCACCATCTCTACGTGCCTTCACACCTTTTGCAGGAAATGCATATATGAGAAACTCTCGGATGAGGAGACGGATTGCTGTCCTGTGTGCAATATTGACTTAGGCTGCCTTCCGGTGGAGAAACTCAGGCCAGACCATAATTTGCATGACATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAGATCAAGGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACAAAAAACAGTACAAGAAAGGCTGCCGCTTTACGTGGATGCAGTTTCCTTCTTGACGAATCCATAAAGAAGGAACAAGCAAATGGTGACGATAATATGGATTCTTCCATGCCTGAACCTTCTAAGAAGCATAAGCCCCATGAAGATACAGAGAACAATGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAACTACTCCTCATGGTGGACAAGATACATCTGAAACTACAACCAAAACAGACCTACCTGCTTCTGCCAAGAGTGAATTAAACATTCCAAAATCCAAAAATAAGGATACTGGACATAAAACAATATTTGGAGATGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGGGAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCTGCATCTGAGATGTCTGCCTCTTCCCCAGCCCCACTAGATACAACAGGGGGCAAGTGCAACAGGAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTGCGGTGCCTGTCTCATTTATTCAGAAGTACCTTGTGAAGAAACTTAATCTTGCCTGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTTTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCATATTGTCGAAAGGCCTTGCCTCCTTGA 1299 0.4388 MVSSQLVKVKRDTLRPCMTCPLCHNFFKDATTISTCLHTFCRKCIYEKLSDEETDCCPVCNIDLGCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKNSTRKAAALRGCSFLLDESIKKEQANGDDNMDSSMPEPSKKHKPHEDTENNVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPTTPHGGQDTSETTTKTDLPASAKSELNIPKSKNKDTGHKTIFGDDKDANSLPSGPGKRRRLRPAGQKRVAASEMSASSPAPLDTTGGKCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGAVPVSFIQKYLVKKLNLACEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01603 432 SMART ring_2 20 60 IPR001841 -
Gma10g01603 432 MobiDBLite consensus disorder prediction 299 316 - -
Gma10g01603 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Gma10g01603 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Gma10g01603 432 MobiDBLite consensus disorder prediction 158 193 - -
Gma10g01603 432 Gene3D - 308 408 - -
Gma10g01603 432 MobiDBLite consensus disorder prediction 256 273 - -
Gma10g01603 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 430 IPR044807 GO:0004842
Gma10g01603 432 MobiDBLite consensus disorder prediction 208 316 - -
Gma10g01603 432 SUPERFAMILY RING/U-box 14 84 - -
Gma10g01603 432 MobiDBLite consensus disorder prediction 158 191 - -
Gma10g01603 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 430 - -
Gma10g01603 432 MobiDBLite consensus disorder prediction 208 249 - -
Gma10g01603 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Gma10g01603 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01603 Gma-Chr10 43114389 43119747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01603 1 351 C3H Transcription Factor Family AT2G30580 43.342 5.40e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01603 K16277 - gmx:100783999 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01291 02 14998554 15005478 Gma10g01603 10 43114389 43119747 ECH
Gma10g01603 10 43114389 43119747 Gma10g01603 10 43114389 43119747 ECH