Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01599 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCGAGTGATCACAACGAGTCAACAACGGTCAAGGGCAGTGGTGGAAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCCAGTGATGACTCTGCCTCAGATTCACCTTCATCTGCGTCTACAGAGAAGACTACCACTGCTGCACCTCCTCCTCCTTCTCGAGCCAACGACCCTGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAAGAATGAAGAGGAAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGAAAGGTGGACATAAAGTTGTACAAGAGCTACCAGGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACGATTGAAAAATGTGGGTCCCAAGGGATGAAGGACTTTATGAATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 696 0.4871 MINFEETELRLGLPGGSASDHNESTTVKGSGGKRGFSETASVDLKLNLSSSDDSASDSPSSASTEKTTTAAPPPPSRANDPAKPPAKAQVVGWPPVRSFRKNIVQRNKNEEEAAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIEKCGSQGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCQRLRIMKGSEAIGLAPRAVEKCKNRS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01599 231 MobiDBLite consensus disorder prediction 42 73 - -
Gma10g01599 231 ProSiteProfiles PB1 domain profile. 113 213 IPR000270 GO:0005515
Gma10g01599 231 MobiDBLite consensus disorder prediction 1 89 - -
Gma10g01599 231 Pfam AUX/IAA family 6 222 IPR033389 -
Gma10g01599 231 Gene3D - 107 225 - -
Gma10g01599 231 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 224 IPR003311 GO:0005634|GO:0006355
Gma10g01599 231 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 224 - -
Gma10g01599 231 MobiDBLite consensus disorder prediction 18 32 - -
Gma10g01599 231 SUPERFAMILY CAD & PB1 domains 109 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01599 Gma-Chr10 43075904 43079179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01599 107 216 B3 DNA Binding Superfamily AT1G19220 31.818 5.68e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma10g01599 AUX_IAA 4.7e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01599 K14484 - gmx:100781847 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01298 02 15048424 15051821 Gma10g01599 10 43075904 43079179 ECH
Gma10g01599 10 43075904 43079179 Gma10g01599 10 43075904 43079179 ECH