Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01598 ATGGCAGGTAATAGCAGCTCGGAGGGGTTGGTCGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCTGCTGCTTTCAGAGGAGCTGCTGGGTTAATGCCTCTGGGCTTGAATTTGGAGCAAGCTGGCTTTCTAAGACACCAACACCAAATTAACGTTGACGACGTTGTTCATGTTAATGTTGATGATGCCACCATTCACCACCATCACCTCACTCTCCACAATAACACCACCTCCTCATCACCTTCTTCCACTGCACCAATCACCGATAGGGATTCGATGCATATGAGAGGCTTATTTTCCGCGTTTGGACAACTCCATACTCCTACTCTTGCTCACTCTATCCGCCCCACGCTGCCATCGCCTCCACCCCCTCGTCAGCCACAACTCCACCTCCACCATCATAATAACCAACAGTTTCAGGGCCAACCAGCTGCAGCTCCAGCATCAATGGCTGCTATGCCACAACCACCTGGGATCCGCCCTCGTGTGAGAGCAAGAAGAGGACAAGCCACAGATCCCCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCAGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGAGGAGCTGGTGCAGTTGCTCAGCTTGTTGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGATCAGGACATAGAAGGTGTATCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAGGTGGCTAAGCTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCAATATCTCTAGCCTCATCCATTTTCCGCATGCCTCAATCGGAAGCATCAACAGGCATCAAACCTGAATCTAACAGTCACTGA 984 0.498 MAGNSSSEGLVDDFFEQILAVPEAAAFRGAAGLMPLGLNLEQAGFLRHQHQINVDDVVHVNVDDATIHHHHLTLHNNTTSSSPSSTAPITDRDSMHMRGLFSAFGQLHTPTLAHSIRPTLPSPPPPRQPQLHLHHHNNQQFQGQPAAAPASMAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDIEGVSNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASSIFRMPQSEASTGIKPESNSH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01598 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 230 IPR036638 GO:0046983
Gma10g01598 327 Gene3D - 166 228 IPR036638 GO:0046983
Gma10g01598 327 SMART finulus 177 226 IPR011598 GO:0046983
Gma10g01598 327 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 314 - -
Gma10g01598 327 Pfam Helix-loop-helix DNA-binding domain 176 220 IPR011598 GO:0046983
Gma10g01598 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 314 - -
Gma10g01598 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01598 Gma-Chr10 43064601 43069686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01598 141 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.581 1.35e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g01598 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01598 - - gmx:100781299 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01302 02 15084780 15096689 Gma10g01598 10 43064601 43069686 ECH
Gma10g01598 10 43064601 43069686 Gma10g01598 10 43064601 43069686 ECH