Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01590 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGGCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGATGGAGCTTATCTCTAAATTTAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGTTATGTCTGCATCATTATAGGTTATTGTGAGGGGGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGTATCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAATACTTGCACATGAACCACATTCTCCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCATGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGACATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCACATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCGGAGCTGCTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAACTCAACAGCCCCAGACAAAGCACATTGCCAGTTCACTGGCCAGAATCCAACTGTATGAAGAAAACTAGATTTTTGGTGCCAGAAGATTATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCACCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCCGATCAAGATTCTGTATGTTCTACTCTAGAAATAGATTGTACTCCTGACCATTTGAATCAAAGACTAGCAGAACTACGTATTGGAAATAGCCATCAAGTGAAGTCAATCCAGAAGCCTGTTGTTTCCAGAACTTCTAGCATTATTGTTAAGACTCCAAAATTCACTTCCTCAAAAGTCTCAGCCACCAACAAGAAATCAATGGAATCCTCAAAGAATCATAAGATGCTTCCCCTTTCACAAAATACCACAAAATCTGCTAATACTAATCGCAGAGCATCATTTCCACTGCCAACAAGGGGTGGTATTCGGCAGCCTCCTTGCAGGTCTGTCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGGATTGATAAGATGGCTGAATTCCCATTAACTTCATATGAAGATTCTTTGTTCCCTATCAAGAGAGCATCATCCTCTGCACGAGGTTCCTCAGGCTTCCCATCTTATAGCAACCATTCAACTGTGATAGACAAATGCACGGTAGAGGTGTATGATACAGCCTCTAACAAGCCTGGTTGTATGGATGCTTGGCAGGGAATCAAGCAGAGCATGTTAAAGGAGATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACTGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGACCCATCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTTTCAACCCAGAAGAATCCATGTAA 1863 0.4214 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVLKVHLKLNSPRQSTLPVHWPESNCMKKTRFLVPEDYPVSIYRDKRHSFTNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGNSHQVKSIQKPVVSRTSSIIVKTPKFTSSKVSATNKKSMESSKNHKMLPLSQNTTKSANTNRRASFPLPTRGGIRQPPCRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPIKRASSSARGSSGFPSYSNHSTVIDKCTVEVYDTASNKPGCMDAWQGIKQSMLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01590 620 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Gma10g01590 620 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01590 620 CDD STKc_Nek 3 258 - -
Gma10g01590 620 MobiDBLite consensus disorder prediction 386 417 - -
Gma10g01590 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma10g01590 620 PANTHER SERINE/THREONINE-KINASE NEK4 1 605 - -
Gma10g01590 620 MobiDBLite consensus disorder prediction 531 546 - -
Gma10g01590 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01590 620 MobiDBLite consensus disorder prediction 524 555 - -
Gma10g01590 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01590 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 605 - -
Gma10g01590 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma10g01590 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma10g01590 620 MobiDBLite consensus disorder prediction 386 428 - -
Gma10g01590 620 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01590 Gma-Chr10 42973584 42979761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01590 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 3.97e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma10g01590 Pkinase 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01590 K08857 - gmx:100788588 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01590 10 42973584 42979761 Gma10g01590 10 42973584 42979761 ECH
Gma19g02295 19 51670068 51686570 Gma10g01590 10 42973584 42979761 PCT
Gma03g02260 03 47913490 47919133 Gma10g01590 10 42973584 42979761 PCT
Gma10g01590 10 42973584 42979761 Gma19g02295 19 51670068 51686570 PCT
Gma10g01590 10 42973584 42979761 Gma03g02260 03 47913490 47919133 PCT