Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01579 ATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtcgttgatgtccttcatccagggagggctaatgtttccaaggctgaactgaaggagaagctgggaagaatgtatgacgtgaaagacaccaacactgtatttgtcttcaagttccgaactcattttggtggtggcaagtccactgggtttggtttgatctatgattcagttgagaatgctaagaagtatgagcctaaatacaggcttatcaggAATGGACTTGATACCaaagtagagaaatcaaggaagcaaatgaaggagagaaagaatagagctaagaagattcgtggagttaagaagaccaaggcatctgatgctgcaaaggcgggaaaaaagaaatga 414 0.1014 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01579 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Gma10g01579 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Gma10g01579 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Gma10g01579 137 Gene3D - 1 132 - -
Gma10g01579 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Gma10g01579 137 MobiDBLite consensus disorder prediction 102 137 - -
Gma10g01579 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Gma10g01579 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01579 Gma-Chr10 42863361 42865456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01579 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 85.606 5.27e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01579 K02974 - gmx:100499673 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01579 10 42863361 42865456 Gma10g01579 10 42863361 42865456 ECH
Gma10g01579 10 42863361 42865456 Gma20g02130 20 48563628 48565447 GST
Gma19g02287 19 51603683 51605598 Gma10g01579 10 42863361 42865456 PCT
Gma03g02252 03 47843782 47845673 Gma10g01579 10 42863361 42865456 PCT
Gma10g01579 10 42863361 42865456 Gma19g02287 19 51603683 51605598 PCT
Gma10g01579 10 42863361 42865456 Gma03g02252 03 47843782 47845673 PCT