Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01564 ATGGGGTGTGTGATTAGCCGAGAAGTGTCATCGGGAATAGTCTCCGAGGTGAAGGAGGAGAAGAATTTGAGTGTTGGGTCCAACAAGAAAGTTGATGAAGCGTCCACAAGCGGAGCTGAGGAGAATGCGGTAGAGGCTCAGAATGGTGAGAAGGAGAAGGAAGAGAATGGTGGCGGTGATGATCGTGTTCGGCGGCCGAAGGGTGAAAGAAGAAGATCAAAGCCAAATCCAAGGTTAAGTAATCCACCAAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGCTGGCCACCTTGGCTAACAGCAGTGTGTGGGGAAGCACTTAGTGGGTGGATTCCCCGAAAGGCTGACACCTTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAGAGTGTTAAATTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAACGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTTACAGAGCCTCAGGTTAAATGTTACATACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTCATTGACAATGAAGGAATACTTAAAATTGCTGACTTCGGACTTGCATCTTTCTTTGATCCAAATCGCCGGCAACCCATGACTAATCGTGTGGTTACCCTTTGGTACCGACCTCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGCGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTTTGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACTTTGTTTAAACCTCGACATCCATACAAGAGATGCATAACAGAGACATTTAAAGATTTTCCACCTTCAGCACTGCCCCTTATTGACACTCTTCTTGCAATTGATCCTGCAGAACGGAAGAGTGCCACAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCTGGCAAAGCTCACGTTGATGGTGCAAAGAAGCATCGTACGCGTGATCGCGCTGCAAAAGCTGCTCCTGCTCCTGAAGGCAATGCTGAGCTTCAATCCAACATTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATGAAGATGGACAGCTTGGCTTTCCTTTGGGATCTTCTAATCATATTGATCCAGATATTGTTCCTTCTGATGTTTCTTTCGGTTCAACCTCATACACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATACTGCTAGCATTAGTGTCACAAAGCGGAAGAAACACACTGCAGGTGCACTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1740 0.4425 MGCVISREVSSGIVSEVKEEKNLSVGSNKKVDEASTSGAEENAVEAQNGEKEKEENGGGDDRVRRPKGERRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYIHQLLSGLEHCHSRNVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNRRQPMTNRVVTLWYRPLELLLGATEYGAAIDLWSVGCILGELLAGKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPRHPYKRCITETFKDFPPSALPLIDTLLAIDPAERKSATDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRSRAAGKAHVDGAKKHRTRDRAAKAAPAPEGNAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPSDVSFGSTSYTFSKEPFQAWSGPIGNTASISVTKRKKHTAGALDLSKPYKGALKDKVKGKKIIA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01564 579 PANTHER OS01G0367700 PROTEIN 43 557 - -
Gma10g01564 579 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Gma10g01564 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Gma10g01564 579 MobiDBLite consensus disorder prediction 1 90 - -
Gma10g01564 579 MobiDBLite consensus disorder prediction 420 457 - -
Gma10g01564 579 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01564 579 MobiDBLite consensus disorder prediction 45 67 - -
Gma10g01564 579 MobiDBLite consensus disorder prediction 412 475 - -
Gma10g01564 579 CDD STKc_CDK9_like 118 402 - -
Gma10g01564 579 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Gma10g01564 579 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Gma10g01564 579 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01564 579 Gene3D Transferase(Phosphotransferase) domain 1 201 442 - -
Gma10g01564 579 PANTHER CELL DIVISION PROTEIN KINASE 43 557 - -
Gma10g01564 579 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01564 Gma-Chr10 42690410 42696963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01564 110 440 Core Cell Cycle Gene Families AT5G10270 53.314 6.38e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma10g01564 Pkinase 7.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01564 K08819 - gmx:100817289 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01564 10 42690410 42696963 Gma10g01564 10 42690410 42696963 ECH
Gma19g02280 19 51462730 51468317 Gma10g01564 10 42690410 42696963 PCT
Gma03g02241 03 47693599 47698832 Gma10g01564 10 42690410 42696963 PCT
Gma10g01564 10 42690410 42696963 Gma19g02280 19 51462730 51468317 PCT
Gma10g01564 10 42690410 42696963 Gma03g02241 03 47693599 47698832 PCT