Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma10g01555 | ATGGAGTGCAACAAGGATGAGGGTTTAAGGGCTAGGCAAATTGCTGGAGCTAGAACGCAAAGAGGTGAATTTGTGGAGGCACTCAAGTTTGCTACCAAGGCTAAAAACATTCCCCAGATTATTACGGTTTGTGAGGTTCACATTCCTGCTCAGAAAAATCTCTCTGGCTCTGAAATGGACTGGTATGCAATTCTTCAGATTGAAAGGTTGGCTGATGAAGCAACCCTAAAGAAACAGTACTGGAAGCTTGCACTGCTACTTCATCCTGATATTGATAAGAATAAGTTTGTCGGTGAAGAAGCTGCATTCATGTTGATTGGGGAAGCCAATGGGGTCTTGAGTGACCAAACAAAGTGTACTTTGTATGACATCAAGTTCGGAGCCGCTGCGACAGGTGCTGCACCTAAGACCTCACACCATTACTCAAATGGGAATGTGTTTGATGCAAAACATAATGCAAATGCAACAAATAATCAGAAGAGTTCTGGTTCATGCCATTTCTCTAATGGGAATGTGTTTGCTGCAAAATATGATGCAAAGGCAAGTGTTCATCAGAAGAATTCTTATCCAAACTCCACTGGTTTCAACAACCAAGCTGGACAAATGATATTCTGGACATCTTGCCAACATTGGTGTCTCACCATCAGCGTTTGCTTCAGTAAATATCCAGAAAGAGGCTCCAATGCATGGTCCCCCAAAACCAGCCTCGAAAAATACTGGTGGAAAACTAGTAAAGATGGCTATGTTCCTGCATCCAGAGATATGATGCCACAAACCTCTAAAAATGTTGGAAGTAAAAGAGCAAGACAAGCAACACCAGACTCAGGAGAAATTCTCCAAGCTAGAAATGGTGAAGATATGAAAGAGTTAATGCATGGCGATCTTCCAAGAAAAAGCAACATGTTTCAAATTAATGTGTAA | 921 | 0.4169 | MECNKDEGLRARQIAGARTQRGEFVEALKFATKAKNIPQIITVCEVHIPAQKNLSGSEMDWYAILQIERLADEATLKKQYWKLALLLHPDIDKNKFVGEEAAFMLIGEANGVLSDQTKCTLYDIKFGAAATGAAPKTSHHYSNGNVFDAKHNANATNNQKSSGSCHFSNGNVFAAKYDAKASVHQKNSYPNSTGFNNQAGQMIFWTSCQHWCLTISVCFSKYPERGSNAWSPKTSLEKYWWKTSKDGYVPASRDMMPQTSKNVGSKRARQATPDSGEILQARNGEDMKELMHGDLPRKSNMFQINV | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma10g01555 | 306 | ProSiteProfiles | dnaJ domain profile. | 60 | 126 | IPR001623 | - | |
| Gma10g01555 | 306 | PANTHER | DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN | 1 | 210 | - | - | |
| Gma10g01555 | 306 | CDD | DnaJ | 60 | 115 | IPR001623 | - | |
| Gma10g01555 | 306 | PRINTS | DnaJ domain signature | 80 | 95 | IPR001623 | - | |
| Gma10g01555 | 306 | PRINTS | DnaJ domain signature | 62 | 80 | IPR001623 | - | |
| Gma10g01555 | 306 | PRINTS | DnaJ domain signature | 98 | 118 | IPR001623 | - | |
| Gma10g01555 | 306 | PANTHER | - | 1 | 210 | - | - | |
| Gma10g01555 | 306 | PANTHER | - | 243 | 290 | - | - | |
| Gma10g01555 | 306 | Pfam | DnaJ domain | 60 | 123 | IPR001623 | - | |
| Gma10g01555 | 306 | SMART | dnaj_3 | 59 | 118 | IPR001623 | - | |
| Gma10g01555 | 306 | Gene3D | DnaJ domain | 57 | 209 | IPR036869 | - | |
| Gma10g01555 | 306 | PANTHER | DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN | 243 | 290 | - | - | |
| Gma10g01555 | 306 | MobiDBLite | consensus disorder prediction | 251 | 274 | - | - | |
| Gma10g01555 | 306 | SUPERFAMILY | Chaperone J-domain | 58 | 133 | IPR036869 | - | |
| Gma10g01555 | 306 | MobiDBLite | consensus disorder prediction | 255 | 269 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma10g01555 | Gma-Chr10 | 42618272 | 42619298 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma10g01555 | 39 | 123 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT2G01710 | 43.333 | 1.30e-11 | 62.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma10g01555 | - | - | ccaj:109790324 | 313.538 |