Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01549 ATGTCAAACCGTGAGAAACAATTACGAAATTCAAATCATTGGAAGGATCATGACGAAGCCTGTTCATGTGTATGTCCCTCCACAGAGATTCAAAGAAACCTACAAACCGATCAAACAGTGACAAACATATATCAACAAAAAATAACAGCCAATGAAAGAGCCAAAATAAGAAACGGGGACAAGAAGAAAAACCAAGCTAATAAATCGAAGAAGAAGCTTACAATTGCAGAAGCTTTAAATTTTGAATCTCATATGCAGCATGccaatcccaatcccaatcccaataccaataccaataccaatgccaatTCGAGGTCCAAAAGAGCTACCAAGAGACAAGCCTCTCTATTTTCTTGTTATTCTTCTGCCCATGACTTGAGGCATTTGGAATTGGAGAAAGAGAAAGAAGACTCATCATCACCAAGAGAAGTCTTGGAAGCCTTCATGAAAGACTTCGTTGACTCTCATCACGAACAATCACATGAATCTGAAACCACTAGTTCAACCACGAAGACACACTATCACTGGACCAAATTCTTCAAACTTTGGAAGAAAAAGTCTTTTAAGCGCCTAGGTTCCATCCCTCCTCTTAGTGTGCCAAAGCTACCAAAATGGAAAAGCAAAAGCAGCAGAGAAAACCAAGCTCTAAGTAAGCTATACAACTTCAGGTCTTCTTGGGTCACTTTCAGCCTCTCAAAACTCAGACATGCAACCAACAATTTTAGTGCTGAAAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAAGGCTGTCTCCAAAATGGGCAATTAATAGCTGTGAAGAAATTGACTAAAGGGACCACAGATGAAAAAACCGCAGGCTTTCTATGTGAGCTAGGTGTAATTGCTCATGTTGACCATCCTAATACTGCAAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCTTCTTGTCTTTCAACTATCTACCCTCGGAAGCTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTTGTCTTGGAATAGCTGATGGTCTCCTCTATCTGCACGAGTGTTGCCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAATATTCTGCTCACGGAGAATTTTGAGCCACAGATATGTGATTTTGGACTTGCCAAGTGGTTACCAGAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGCTACTTTGCTCCTGAATATTTCATGCATGGAATAGTAGATGAGAAAACTGATGTTTTTTCATTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTCCAGCGGTGGATCATATGCAGCAGAGTGTTGTGATATGGGCAAAACCATTGCTTGATAAAAATCATATCAAGGACCTCGTTGATCCTTCTCTTGGCGATGATTATGAACGAGGACAGTTGAGCTGTGTAGTTTTGACTGCATCAATGTGTATTGAGCACTCTCCTATCTTCCGCCCCCGCATGAGTCAGGTTGTAACACTGCTAAGAGGTGAAGACCATGTTCTGAAAGCTAAAAAATCAAGCCAAAGTAGTAGGTCTCTACAAAGAACATACTCAGAAGAGCTACCAGACGCGCAAGAATACAACTCAACAAAACATCTAAGAGATCTCAAGCGATTTGAGCAGTTAACATTGTCTAAATGA 1680 0.3887 MSNREKQLRNSNHWKDHDEACSCVCPSTEIQRNLQTDQTVTNIYQQKITANERAKIRNGDKKKNQANKSKKKLTIAEALNFESHMQHANPNPNPNTNTNTNANSRSKRATKRQASLFSCYSSAHDLRHLELEKEKEDSSSPREVLEAFMKDFVDSHHEQSHESETTSSTTKTHYHWTKFFKLWKKKSFKRLGSIPPLSVPKLPKWKSKSSRENQALSKLYNFRSSWVTFSLSKLRHATNNFSAENIIGRGGFAEVYKGCLQNGQLIAVKKLTKGTTDEKTAGFLCELGVIAHVDHPNTAKLVGCCVEGEMLLVFQLSTLGSLGSLLHGSDKNKLDWSKRYKICLGIADGLLYLHECCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVFSFGVLLLEIITGRPAVDHMQQSVVIWAKPLLDKNHIKDLVDPSLGDDYERGQLSCVVLTASMCIEHSPIFRPRMSQVVTLLRGEDHVLKAKKSSQSSRSLQRTYSEELPDAQEYNSTKHLRDLKRFEQLTLSK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01549 559 Gene3D Phosphorylase Kinase; domain 1 203 315 - -
Gma10g01549 559 Gene3D Transferase(Phosphotransferase) domain 1 318 533 - -
Gma10g01549 559 MobiDBLite consensus disorder prediction 85 113 - -
Gma10g01549 559 Pfam Protein tyrosine and serine/threonine kinase 244 452 IPR001245 GO:0004672|GO:0006468
Gma10g01549 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Gma10g01549 559 ProSitePatterns Protein kinases ATP-binding region signature. 247 270 IPR017441 GO:0005524
Gma10g01549 559 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 116 554 - -
Gma10g01549 559 SUPERFAMILY Protein kinase-like (PK-like) 217 507 IPR011009 -
Gma10g01549 559 SMART serkin_6 241 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01549 559 ProSiteProfiles Protein kinase domain profile. 241 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g01549 559 PANTHER OS08G0249100 PROTEIN 116 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01549 Gma-Chr10 42566487 42577405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01549 205 513 Receptor kinase-like Gene Family AT1G53420 43.302 3.33e-74 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma10g01549 PK_Tyr_Ser-Thr 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01549 - - gmx:100814635 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01373 02 15903121 15906859 Gma10g01549 10 42566487 42577405 ECH
Gma10g00224 10 2060473 2064206 Gma10g01549 10 42566487 42577405 ECH
Gma03g01370 03 39872119 39874639 Gma10g01549 10 42566487 42577405 ECH
Gma19g01436 19 43631927 43634815 Gma10g01549 10 42566487 42577405 ECH
Gma15g00942 15 7859179 7862732 Gma10g01549 10 42566487 42577405 ECH
Gma10g01549 10 42566487 42577405 Gma10g01549 10 42566487 42577405 ECH
Gma10g01549 10 42566487 42577405 Gma20g02160 20 48796298 48799585 GST
Gma03g02223 03 47556379 47566552 Gma10g01549 10 42566487 42577405 PCT
Gma10g01549 10 42566487 42577405 Gma03g02223 03 47556379 47566552 PCT