Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01541 ATGTGTTTGCCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTAGAAGCAGTGGTATTTCCACAATCACAAGACCCTTTTGGTAGTGGTTACGGATCAGTGAATACTAAGGACTTCTACAACTACACCTTGTTGGCTGCTACTTATGAACAACAACACATCAACAAAGAAGAAGAACAAGGTGGTGCTTCTATCTCTACTTTTCAACCAGAGACTAGTAATTACCCTTATGGAGATTGGACCACCAGTTCCTCCTCATCCATGTTACCCCACTTGAATAATGAACTTCAAGAAACCACTACTACTACTAGTAACACCTTAGATAGCTTAAACACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAGATTGAGAACCAAAGAATGACTCATATTGTTGTCGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTGTTAACTTTGTGAAGGAGCTTGAGCAGAGGTTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAAGGGAAATCTGATGATGGTGGTGCAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCGCAGTATTCAACAGGTGGTGGTGGTGGTTCTGATAATTCTGCAGCCATAGGTGAAGACGTGAGTGAGGTTAAGTGTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAATGCCCCAAGCAGCTCTTGAAGCTGGTTTCTGGTTTGCATACCGTGCGCCTCACAATCTTGCACCTAAATGTTACTACCACTGGTGAAGTTGTTCTCTACTCCCTCAGTGTTAAGGTGGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCAGCAGCTGTGTATCAGATGCTAGATAGGATTCAGCAAGAGGCAATGTTGAATTAA 999 0.4354 MCLPEGERDRERAMALEAVVFPQSQDPFGSGYGSVNTKDFYNYTLLAATYEQQHINKEEEQGGASISTFQPETSNYPYGDWTTSSSSSMLPHLNNELQETTTTTSNTLDSLNTRPKRRRAKSRKNKEEIENQRMTHIVVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAVNFVKELEQRLHFLGAQKEGEGKSDDGGATNMPFSEFFTFPQYSTGGGGGSDNSAAIGEDVSEVKCGIADIEVTMVESHANLKIRSKKCPKQLLKLVSGLHTVRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01541 332 PANTHER MAX DIMERIZATION, MAD 14 332 - -
Gma10g01541 332 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 332 - -
Gma10g01541 332 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Gma10g01541 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 194 IPR036638 GO:0046983
Gma10g01541 332 SMART finulus 137 188 IPR011598 GO:0046983
Gma10g01541 332 MobiDBLite consensus disorder prediction 99 127 - -
Gma10g01541 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Gma10g01541 332 Gene3D - 112 196 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01541 Gma-Chr10 42504564 42506348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01541 14 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.624 1.49e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g01541 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01541 - - gmx:100811408 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01541 10 42504564 42506348 Gma10g01541 10 42504564 42506348 ECH
Gma10g01541 10 42504564 42506348 Gma20g02168 20 48839908 48841673 GST
Gma19g02244 19 51161057 51162598 Gma10g01541 10 42504564 42506348 PCT
Gma03g02207 03 47445947 47448104 Gma10g01541 10 42504564 42506348 PCT
Gma10g01541 10 42504564 42506348 Gma19g02244 19 51161057 51162598 PCT
Gma10g01541 10 42504564 42506348 Gma03g02207 03 47445947 47448104 PCT