Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01540 ATGAAGCTTCCCTTCCTTTTCTCCCCCACATTTATAAGAAACCTCGCCTCCTTCACTAATATTATTGATTTCATTTCTATCCCCAAAATGAATAACCCAAATGGAGGAATCTGTTTCCTTCTCTTTCTCTTCCTCTTTCCTTTTGCGGCGGCGCAACCTGCCACCAACCAAAACCAATCCTATTACAACAAGTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCCGCCCTCTTTCTAATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGACTCCCCCTCCGCCAGCATCCGCAATCTCGCCGCCGCCACTGGACGCTCACGGCGCGGCACCCGCGGCCTCGAGCAGGCGGTGATCGACACCTTCCCGACGCTGGAGTACTCGGCGGTGAAGATCCACAAGCTGGGAAAGGGAACTCTGGAGTGCGCTGTGTGCTTGAACGAGTTCGAGGACACCGAAACGCTGCGTTTAATCCCCAAGTGTGACCACGTGTTCCACCCCGAGTGCATCGACGAGTGGCTAGCTTCCCACACCACTTGCCCCGTTTGCCGCGCCAACCTCGTCCCTCAGCCCGGCGAGTCCGTCCACGGAATCCCAATCCTCAACGCTCCTGAGGACATCGAGGCCCAACACGAAGCCCAAAACGACCTCGTCGAGCCCGAACAGCAACAGCAAGACCCCAAGCCTCCCGTTCCCACTGAACCTCAAGTGCTGTCATTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCGGTCGGGCCGGCCGCGGCGATTCCCGCGGTCTCACTCGACCGGTCATTCTTTAGTCCTGCCGGGCGAAGACACTGAACGGTTCACTTTGCGGCTTCCCGAGGAAGTTAGAAAGCAGATATTGCAGAACCCGCAACTGCATCGCGCGAGAAGCCTCGTTATCTTACCGAGAGAAGGTAGTTCGCGGCGGGGGTATCGAACCGGTGAAGGAAGTAGCAGAGGGAGATCGTCGAGGCGGTTGGACCGGGGGTTTAAGTCGGACCGGTGGGTTTTCACCATGGCGCCGCCTTTTTTGGTGAGAGCGTCGTCGATTAGGTCGCCCAGGGTGGCCAATAACGGTGGCGAAGGAACTTCCGCTGCTGCGTCTTTGCCTCCGCCGCCTGCTGTGGAGTCTGTTTGA 1167 0.575 MKLPFLFSPTFIRNLASFTNIIDFISIPKMNNPNGGICFLLFLFLFPFAAAQPATNQNQSYYNKFSPSMAIIIVILIAALFLMGFFSIYIRHCSDSPSASIRNLAAATGRSRRGTRGLEQAVIDTFPTLEYSAVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHGIPILNAPEDIEAQHEAQNDLVEPEQQQQDPKPPVPTEPQVLSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVLPGEDTERFTLRLPEEVRKQILQNPQLHRARSLVILPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNGGEGTSAAASLPPPPAVESV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01540 388 MobiDBLite consensus disorder prediction 365 388 - -
Gma10g01540 388 SMART ring_2 146 187 IPR001841 -
Gma10g01540 388 CDD RING-H2_EL5_like 145 188 - -
Gma10g01540 388 MobiDBLite consensus disorder prediction 239 254 - -
Gma10g01540 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 39 334 - -
Gma10g01540 388 PANTHER RING FINGER DOMAIN-CONTAINING 39 334 - -
Gma10g01540 388 MobiDBLite consensus disorder prediction 313 336 - -
Gma10g01540 388 Pfam Ring finger domain 145 188 IPR001841 -
Gma10g01540 388 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Gma10g01540 388 MobiDBLite consensus disorder prediction 318 336 - -
Gma10g01540 388 MobiDBLite consensus disorder prediction 217 278 - -
Gma10g01540 388 SUPERFAMILY RING/U-box 140 195 - -
Gma10g01540 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01540 Gma-Chr10 42473098 42474507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01540 37 388 Rapid Response to Elicitors AT3G05200 48.056 2.27e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01540 K10664 - gmx:100810865 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01540 10 42473098 42474507 Gma10g01540 10 42473098 42474507 ECH
Gma10g01540 10 42473098 42474507 Gma20g02169 20 48863446 48864441 GST
Gma19g02243 19 51139750 51141461 Gma10g01540 10 42473098 42474507 PCT
Gma03g02206 03 47423239 47424938 Gma10g01540 10 42473098 42474507 PCT
Gma10g01540 10 42473098 42474507 Gma19g02243 19 51139750 51141461 PCT
Gma10g01540 10 42473098 42474507 Gma03g02206 03 47423239 47424938 PCT