Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01534 ATGGATCATCAAGGGCATGGGCATGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGAAATGGACCTCAATTTCCTTATGGTTCTAATCCATACCAGGCCAGCCATATGACAGGTTCACCTGGTATGGTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAACCACCTTCAACTCAGCTAGGACAACATCAACTTGCTTATCAGCACATGCATCAGCAACAACAGCAGCAGCTGCGGCAACGTCTCCAAGCCTTCTGGGCAAACCAATATCAAGAAATCGAGAAGGTGACCGATTTCAAGAACCATAGCCTCCCCTTGGCGAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTCAGAATGATATCGGCTGAGGCACCGGTCATATTTGCGAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGCTCTTGGAATCACACAGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTTTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGTGCTTGCTTCAATGCCAAGAGGAGATGTGCCTGTTACAGGGCCTCCTGAGGCACTTCCTTATTGCTATATGCCACCTCAACAAGTTGGAGCTGCTGGTGTCATGATGGGTAATAAGCCTGTGATGGACCCATATGCTCAACAGACTCATCCCTACAACATGGCACCACAACTGTGGCCACAACCACCACCACCACCAGAGCAGCAACAATCATCTCCAGATCAGTAG 795 0.4767 MDHQGHGHGHGQNPSMGVVGNGPQFPYGSNPYQASHMTGSPGMVVASPGTIQSTGQPPSTQLGQHQLAYQHMHQQQQQQLRQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGDVPVTGPPEALPYCYMPPQQVGAAGVMMGNKPVMDPYAQQTHPYNMAPQLWPQPPPPPEQQQSSPDQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01534 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 264 - -
Gma10g01534 264 MobiDBLite consensus disorder prediction 45 63 - -
Gma10g01534 264 MobiDBLite consensus disorder prediction 1 63 - -
Gma10g01534 264 MobiDBLite consensus disorder prediction 235 264 - -
Gma10g01534 264 Pfam Core histone H2A/H2B/H3/H4 58 168 IPR007125 GO:0003677
Gma10g01534 264 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 7 264 - -
Gma10g01534 264 MobiDBLite consensus disorder prediction 245 264 - -
Gma10g01534 264 Gene3D Histone, subunit A 67 183 IPR009072 GO:0046982
Gma10g01534 264 SUPERFAMILY Histone-fold 68 177 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01534 Gma-Chr10 42425705 42426499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01534 1 227 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.000 1.33e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma10g01534 Histone 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01534 K08066 - gmx:100776494 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01534 10 42425705 42426499 Gma20g02174 20 48900555 48901226 ECH
Gma10g01534 10 42425705 42426499 Gma10g01534 10 42425705 42426499 ECH
Gma10g01534 10 42425705 42426499 Gma20g02174 20 48900555 48901226 GST
Gma19g02238 19 51100240 51102830 Gma10g01534 10 42425705 42426499 PCT
Gma03g02201 03 47391684 47392511 Gma10g01534 10 42425705 42426499 PCT
Gma10g01534 10 42425705 42426499 Gma19g02238 19 51100240 51102830 PCT
Gma10g01534 10 42425705 42426499 Gma03g02201 03 47391684 47392511 PCT