Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01504 ATGGCGGAAACGCACGAAGACACACCGAAAGAAACCGTTCACAAAGAAGAAGAAGAAGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCCTAATCAAGAAAAGAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGTGCCAAAACAGGTTCGGGAAAGACACTCGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTTACTGCTAACTCTGATCGGAAGAAACTCGCGCCAAATGCTTTTGTTCTTGTTCCTACTCGCGAACTAAGTCAACAGGTATATGCGGAAGTGAAGTCTCTGGTTGAATTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGTGTTGCGAAGTGTTTGTCCTGTGGCGTACTTCAGGCGGCATCCATTAATGCATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATTAAAGCTTTAACACCTCACGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTGGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTCCTGCCAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAATTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACAAATACCATAGACATGAGTTTCAGGTTGAAACTTTTCTTGGAAAAGTTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTATTGTTGGATCACGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAGAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAATCTACTGAAGCATGA 1476 0.4241 MAETHEDTPKETVHKEEEEEDQSFEELGVDARLLRALIKKRIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANSDRKKLAPNAFVLVPTRELSQQVYAEVKSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKALTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESIVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVGDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKSTEA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01504 491 SMART helicmild6 291 405 IPR001650 -
Gma10g01504 491 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Gma10g01504 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Gma10g01504 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Gma10g01504 491 CDD DEADc_DDX56 29 236 - -
Gma10g01504 491 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Gma10g01504 491 Gene3D - 1 236 IPR027417 -
Gma10g01504 491 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 11 450 - -
Gma10g01504 491 SMART ultradead3 41 254 IPR014001 -
Gma10g01504 491 MobiDBLite consensus disorder prediction 1 24 - -
Gma10g01504 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Gma10g01504 491 CDD SF2_C_DEAD 251 414 - -
Gma10g01504 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 235 IPR027417 -
Gma10g01504 491 MobiDBLite consensus disorder prediction 1 17 - -
Gma10g01504 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Gma10g01504 491 Gene3D - 238 444 IPR027417 -
Gma10g01504 491 PANTHER RNA HELICASE 11 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01504 Gma-Chr10 42151227 42158510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01504 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.236 1.33e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01504 K14810 - gmx:100800749 919.072