Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01472 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCGGAGGAAGGTCGGAGACGGCGAGAGGACACGATGGTGGAGATCCGCAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGGCTCCAACCTCAGCAGATGCCTGCGTCCGTTCACTCTAGTTTGGTTGAGAAGAAGTTGGAACATCTACCATCGATGGTTACTGGTGTTTGGACTGATGATAATAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATTTGTTGAGTTTCTCATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACAAAGGTTGTGATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATCTTGTTCTAAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCGAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCGAACGATGAAGAAGTTTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTGCTGCTGCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGTAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATCTAATTGCTCCTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATAGGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGAAGCTGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCGGTCAAGATTCTTGAGACATACTGGTTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAGCAGTGACGCTCCTACTGTGCCATCCGGTGGATTCAACTTTAATTAG 1599 0.4653 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQMPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPTVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01472 532 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Gma10g01472 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Gma10g01472 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Gma10g01472 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Gma10g01472 532 Gene3D - 12 52 IPR036975 GO:0006606
Gma10g01472 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Gma10g01472 532 SMART arm_5 190 232 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 360 400 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 403 443 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 275 315 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 149 189 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 234 273 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 106 147 IPR000225 GO:0005515
Gma10g01472 532 SMART arm_5 317 358 IPR000225 GO:0005515
Gma10g01472 532 MobiDBLite consensus disorder prediction 23 62 - -
Gma10g01472 532 MobiDBLite consensus disorder prediction 513 532 - -
Gma10g01472 532 MobiDBLite consensus disorder prediction 23 52 - -
Gma10g01472 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Gma10g01472 532 Gene3D - 74 497 IPR011989 -
Gma10g01472 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Gma10g01472 532 PANTHER IMPORTIN SUBUNIT ALPHA 4 522 - -
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Gma10g01472 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Gma10g01472 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gma10g01472 532 PANTHER IMPORTIN ALPHA 4 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01472 Gma-Chr10 41818670 41824474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01472 153 422 U-box Gene Family AT1G23030 22.963 2.70e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01472 K15042 - gmx:100789135 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01472 10 41818670 41824474 Gma20g02228 20 49397462 49401869 ECH
Gma17g00286 17 2316821 2322843 Gma10g01472 10 41818670 41824474 ECH
Gma07g02345 07 46157096 46161264 Gma10g01472 10 41818670 41824474 ECH
Gma09g00356 09 3354140 3359146 Gma10g01472 10 41818670 41824474 ECH
Gma15g01350 15 12053015 12056785 Gma10g01472 10 41818670 41824474 ECH
Gma10g01472 10 41818670 41824474 Gma10g01472 10 41818670 41824474 ECH
Gma10g01472 10 41818670 41824474 Gma20g02228 20 49397462 49401869 GST
Gma19g02179 19 50627414 50633346 Gma10g01472 10 41818670 41824474 PCT
Gma03g02147 03 46928886 46934168 Gma10g01472 10 41818670 41824474 PCT
Gma10g01472 10 41818670 41824474 Gma19g02179 19 50627414 50633346 PCT
Gma10g01472 10 41818670 41824474 Gma03g02147 03 46928886 46934168 PCT