Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma10g01467 | ATGGGAAGCAGTAGCAGGAAGAAGAACCAAGATCTGGAGTTGGAGAAAGTTCGCTTAATCAGTTTAGCCCTCGAATTTGGCTTCGACGAATCCTCCGCCAACAAATGCCTCGACCGTCTCATCGCTCTCTACGGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGCGGCGCTGGCGGAGTCGATGCAGACCGAGGATTGGGATGACCAGCAGGAAATGGAGTCGCAAGCGTGTGGAACATTGACGCACGTACTCGACAAAACCGTTGACACGTGTGCCGATGCAGATAATGACGATGCTTCGAGAAGCTTCTTCGTTGACATTGTTGACGACTCGCCTCAACCGCAGAGACGCAAAGGCAAAAGCCACACTAATGTAGTGGAGTTGGATTCGAGTGACGACGAGGATATGCACTGTAGTGTTTCGAGGGAAAAACCTACGGATTACAGAAGTGGCATTACTCAAGGGTCAGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATACAAGCAGTAGTCCCACTTATGAAGAATTGCAAGCACTAGATGATATTGAACTGGCCAATGTTGTTATCTTTGGTAATAGGACGTTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCTACTCTTCAACCAGGTGTTACAGTAGTTGTATCTCCATTACTTTCACTCATTCAGGACCAGATTATAACACTAAACCTCAAGTTCGGAATACCTTCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGTCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTTGAGATTCTAAAATTCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACATTGTGTTAGCCAATGGGGACATGATTTTCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCTACACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACGCATGCTGTTCGTGAGGACATATTGAAGGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGCTAAGACAAAGGAGCCACTAAAGCAGCTAGGACAGTTACTAATTGATCGCTTCAGGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCCAAATTTTTGAATGAGAAATGCAAGATCAAAACAGTGTATTATCATGCTGGCTTGGCTGCCCGACAGAGAGTAGCCGTTCAAAAAAAATGGTATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATTCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATTTTCCTTCAGTTTGCATTGCCCTATACCAAAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATTAAGGCTGAATGCCGGAGACAAACTTTACTCAAACATTTTGGAGAATCTTTTGATAGAAAAGACTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGAATGTATTGTGA | 1833 | 0.4315 | MGSSSRKKNQDLELEKVRLISLALEFGFDESSANKCLDRLIALYGEDGRDFITVEHCGDDFLAALAESMQTEDWDDQQEMESQACGTLTHVLDKTVDTCADADNDDASRSFFVDIVDDSPQPQRRKGKSHTNVVELDSSDDEDMHCSVSREKPTDYRSGITQGSVSSTSSKMQSSFASRDTSSSPTYEELQALDDIELANVVIFGNRTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPSTFLNSQQTASQVTAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKFMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKLHFPDVPVMALTATATHAVREDILKALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNFPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQEYCEIKAECRRQTLLKHFGESFDRKDCKYGSSPCDNCLKNVL | 610 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma10g01467 | 610 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 248 | 546 | IPR027417 | - | |
Gma10g01467 | 610 | CDD | SF2_C_RecQ | 401 | 534 | - | - | |
Gma10g01467 | 610 | SMART | helicmild6 | 443 | 525 | IPR001650 | - | |
Gma10g01467 | 610 | Gene3D | - | 401 | 609 | IPR027417 | - | |
Gma10g01467 | 610 | Gene3D | - | 164 | 400 | IPR027417 | - | |
Gma10g01467 | 610 | MobiDBLite | consensus disorder prediction | 116 | 184 | - | - | |
Gma10g01467 | 610 | MobiDBLite | consensus disorder prediction | 154 | 184 | - | - | |
Gma10g01467 | 610 | MobiDBLite | consensus disorder prediction | 119 | 152 | - | - | |
Gma10g01467 | 610 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 217 | 393 | IPR014001 | - | |
Gma10g01467 | 610 | PANTHER | BLOOM SYNDROME PROTEIN | 32 | 607 | - | - | |
Gma10g01467 | 610 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 32 | 607 | - | - | |
Gma10g01467 | 610 | Pfam | RecQ zinc-binding | 537 | 606 | IPR032284 | - | |
Gma10g01467 | 610 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 418 | 573 | IPR001650 | - | |
Gma10g01467 | 610 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 203 | 608 | IPR004589 | GO:0004386|GO:0006310 | |
Gma10g01467 | 610 | SMART | ultradead3 | 205 | 409 | IPR014001 | - | |
Gma10g01467 | 610 | Pfam | DEAD/DEAH box helicase | 211 | 379 | IPR011545 | GO:0003676|GO:0005524 | |
Gma10g01467 | 610 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 332 | 341 | IPR002464 | - | |
Gma10g01467 | 610 | CDD | DEXHc_RecQ | 203 | 400 | - | - | |
Gma10g01467 | 610 | Pfam | Helicase conserved C-terminal domain | 417 | 524 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma10g01467 | Gma-Chr10 | 41771142 | 41776567 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma10g01467 | 334 | 523 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 27.041 | 1.30e-09 | 58.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma10g01467 | K10899 | - | gmx:100806070 | 1207.97 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma10g01467 | 10 | 41771142 | 41776567 | Gma10g01467 | 10 | 41771142 | 41776567 | ECH |