Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01452 ATGGAGGATATTTACAAGATGAATCCTCTTCTTTCATGTTCCGGCGGGGATGTTGTTAGGGAAGTTAACGTTAATTCCGCTACTGGTGCTTCTGAATTGAATCTTGGACTGGTGGCTAACAACTTCTTTTCGGATATTTCGGATCGGTTCATCAAGTCCCAGATCGCCACTCACCCTCTCTATCCAAATCTAGTATCCGCTTACATAGAATGCCGAAAGGTTGGAGCACCACCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCTACCCAACGGATGCTCTTCGTGAGATAGGAGATGATCCTGAACTTGACGAATTCATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCGAAGCCATTCAACGAAGCGACCTTGTTTTTGTGCAGTATCGAATCACAACTCAGCAATCTTTGCAAGGGAACACTGACAATGCCATTGGATAACAACCACTCAGATGAGGCCGCTGGAACATCAGAGGATGAATTGAGTTGGGAGAAGGTGGAAGCAGTTGAAGGTCACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAAAAAGGAATTTCTTAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGTACTCATGGACTGGTGGAACACCCACTATCGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGAAAACGGCATTGGAAACCATCAGAGGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGTGGCTTTGGAGGACCTATCTAA 891 0.4478 MEDIYKMNPLLSCSGGDVVREVNVNSATGASELNLGLVANNFFSDISDRFIKSQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESYPTDALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTMPLDNNHSDEAAGTSEDELSWEKVEAVEGHESSGPRPGDQELKEMLLRKYGGYLSSLKKEFLKKRKKGKLPKDARMVLMDWWNTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSGFGGPI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01452 296 Pfam ELK domain 192 213 IPR005539 GO:0003677
Gma10g01452 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 286 - -
Gma10g01452 296 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Gma10g01452 296 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Gma10g01452 296 SMART KNOX2_2 96 147 IPR005541 GO:0003677|GO:0005634
Gma10g01452 296 Pfam KNOX2 domain 100 146 IPR005541 GO:0003677|GO:0005634
Gma10g01452 296 SMART KNOX1_2 49 93 IPR005540 GO:0003677|GO:0005634
Gma10g01452 296 CDD homeodomain 224 276 IPR001356 GO:0003677
Gma10g01452 296 SMART ELK_2 192 213 IPR005539 GO:0003677
Gma10g01452 296 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Gma10g01452 296 Pfam KNOX1 domain 51 91 IPR005540 GO:0003677|GO:0005634
Gma10g01452 296 SUPERFAMILY Homeodomain-like 214 288 IPR009057 -
Gma10g01452 296 Gene3D - 210 282 - -
Gma10g01452 296 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 32 286 - -
Gma10g01452 296 SMART HOX_1 214 279 IPR001356 GO:0003677
Gma10g01452 296 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01452 Gma-Chr10 41636580 41641713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01452 45 292 Homeobox Transcription Factor Family AT1G23380 55.512 2.28e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma10g01452 KNOX2 9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01452 - - gmx:100786114 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01452 10 41636580 41641713 Gma10g01452 10 41636580 41641713 ECH
Gma10g01452 10 41636580 41641713 Gma20g00946 20 36115073 36119889 GST
Gma19g02166 19 50531283 50537101 Gma10g01452 10 41636580 41641713 PCT
Gma03g02130 03 46804368 46826019 Gma10g01452 10 41636580 41641713 PCT
Gma10g01452 10 41636580 41641713 Gma19g02166 19 50531283 50537101 PCT
Gma10g01452 10 41636580 41641713 Gma03g02130 03 46804368 46826019 PCT