Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01450 ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACGAGCACAAAAGGAAAATGCTTCATCTTCACAGCTTACTGGATCCGTGGGTGTGGAGAAGGCATCAAAAGGAGATACCATTTCTTTTGATCGTGCAAGAAATTCTCCAGGACAGTATGATTTGTCAAGAATTAATGATCCTTTCAATCGTGTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGTTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTCGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACGGCTAGAAAAGAACTTGGAAAAATTAAAGAATCGATGGACGATGCTGCATTTGCCTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGATATTCTTCAGAAAGCCTCAGGGGCTCTGAGAAGCACTGTTCAGGGAACTCAAAAATCTCAAAAGTCAGAGGAAAAAATTAATGGAGGCAGCATCCAACCCATTTCACATAGTACTCAAAAGTCTGGACTAGCTGAAGTTAATCATCATAAAAAGGATAATGAACAGCAAATACTTGTTAAAGAATCACTCTTAACAGAGGATGTTGATAGCAGAGAAACAAAAGCCAGAAGCAGGCCTCAATCACAAGGAGGCGATGGCTCTAAAGAAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGCATTACTAAGCTGGAAATGAAAGCATCTGTGCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGTCGTGGCTGAAGCTGCCAAAAATGTAACCCCTCCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTGCCATACTAATTGAGATCATCAAGTGTCTTGCATCTTTTTTCACGGAGGACATGGATCTGGTTGTCAGTTATTTGGAGCATTTGACCAAGGTACCAAGATTTGACGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGGTTTGCCAATCTGA 1290 0.4093 MDFQGFLNDLQDWELSRKDKTRAQKENASSSQLTGSVGVEKASKGDTISFDRARNSPGQYDLSRINDPFNRVHSSFVPEDVPDAVSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAAFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKSQKSEEKINGGSIQPISHSTQKSGLAEVNHHKKDNEQQILVKESLLTEDVDSRETKARSRPQSQGGDGSKEGLSASNSLEQRNHSITKLEMKASVQQLASRAASRVVAEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSAILIEIIKCLASFFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDGLPI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01450 429 Pfam Potential Monad-binding region of RPAP3 335 424 IPR025986 -
Gma10g01450 429 SUPERFAMILY TPR-like 82 199 IPR011990 GO:0005515
Gma10g01450 429 SMART tpr_5 84 117 IPR019734 GO:0005515
Gma10g01450 429 SMART tpr_5 151 184 IPR019734 GO:0005515
Gma10g01450 429 SMART tpr_5 118 150 IPR019734 GO:0005515
Gma10g01450 429 Gene3D Tetratricopeptide repeat domain 75 182 IPR011990 GO:0005515
Gma10g01450 429 PANTHER OS05G0129900 PROTEIN 1 427 - -
Gma10g01450 429 MobiDBLite consensus disorder prediction 244 258 - -
Gma10g01450 429 MobiDBLite consensus disorder prediction 18 57 - -
Gma10g01450 429 MobiDBLite consensus disorder prediction 210 295 - -
Gma10g01450 429 MobiDBLite consensus disorder prediction 280 295 - -
Gma10g01450 429 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Gma10g01450 429 MobiDBLite consensus disorder prediction 265 279 - -
Gma10g01450 429 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01450 Gma-Chr10 41594480 41599961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01450 81 154 U-box Gene Family AT3G07370 38.961 1.05e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01450 K23002 - gmx:100784528 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01450 10 41594480 41599961 Gma10g01450 10 41594480 41599961 ECH
Gma10g01450 10 41594480 41599961 Gma20g00944 20 36066229 36071373 GST