Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01446 ATGGAGACCAAAGAGGAGAGGAAGATGATACTTCCATCGCCATCGGAGACCCAACTCATGAACCTTGTTAATGTCTCCATCACCAATGCAAGTGCTGGCGAGTCCCATGTAGAACAATGTTCTAttctctcGGTGATGATGACTCCTGAGAGTTTCTACTTGAAACTCGCCGAGTTGTTGGAGTCTTCTGGACTGAGTCTCATtttcaatgtcagAGaaacattgctggacttgtacctgttttacttggaggtgaccagaagaggaggatatcacccggttggtcgagaaaagaaatggggtgaagtagtctTTGCCCTGAAATTGGAAGGGAATAGTATGAAGTTATGTGCTCAAGTTGAAAAGCTGTATGCACATATTCTCTACCAGTTTGAGAAATTGTACTTCTACAGGCgtccactTCAGAAGAAGCGGAATTCAACAGCTAGTTTACCTTATATAATGGATATTAAAGATGGTATGAAGGTCACAGAGATCTCCAAGGACTACTCTTGCCACATGACAAGTTCTCCGCCGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTAGATTGAAAACTTGTAGTCAGGCCTTAGATGGCCAGAAAATCCTACGTTTGGCTATTGATACATGGAGGAATATGTCTGAAATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAAAAAGGAAGAAATTAAGGAAGCAATGAATGACCACAATAAACAGCAAATCACCCAAGATACCATCAGGGAGGAGAAGTGGCATAGTCTGAGTGGTGATTATCTTGTAACTTCACAACCTGAGACAGATAACTCCCTTTTCAACAAAGCCACTGTTGGGTTAGCTCTTAAAATGACCGAAAAAGCACCAACAGATCCTTCATATCTAATGGACTGGAATGCTTTTTTGTTCACTGGATTTTCCCAATTAGGGAATCCGAGTAACTCCACTAGTCTAGTTATAGGTAAGTTATTTTTTGCTCAGAGGCCATGA 1011 0.365 METKEERKMILPSPSETQLMNLVNVSITNASAGESHVEQCSILSVMMTPESFYLKLAELLESSGLSLIFNVRETLLDLYLFYLEVTRRGGYHPVGREKKWGEVVFALKLEGNSMKLCAQVEKLYAHILYQFEKLYFYRRPLQKKRNSTASLPYIMDIKDGMKVTEISKDYSCHMTSSPPGRKTAYQIFLKHECARLKTCSQALDGQKILRLAIDTWRNMSEIEKQPYVEESKKKKEEIKEAMNDHNKQQITQDTIREEKWHSLSGDYLVTSQPETDNSLFNKATVGLALKMTEKAPTDPSYLMDWNAFLFTGFSQLGNPSNSTSLVIGKLFFAQRP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01446 336 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 176 306 - -
Gma10g01446 336 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 175 - -
Gma10g01446 336 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 178 246 IPR009071 -
Gma10g01446 336 SMART bright_3 47 137 IPR001606 GO:0003677
Gma10g01446 336 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 176 306 - -
Gma10g01446 336 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 175 - -
Gma10g01446 336 SMART hmgende2 177 247 IPR009071 -
Gma10g01446 336 Gene3D - 29 150 IPR036431 GO:0003677
Gma10g01446 336 Coils Coil 228 248 - -
Gma10g01446 336 Pfam HMG-box domain 180 246 IPR009071 -
Gma10g01446 336 SUPERFAMILY HMG-box 167 246 IPR036910 -
Gma10g01446 336 Gene3D High mobility group box domain 172 264 IPR036910 -
Gma10g01446 336 ProSiteProfiles ARID domain profile. 46 136 IPR001606 GO:0003677
Gma10g01446 336 SMART ARID_2 43 132 - -
Gma10g01446 336 SUPERFAMILY ARID-like 39 138 IPR036431 GO:0003677
Gma10g01446 336 Pfam ARID/BRIGHT DNA binding domain 50 132 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01446 Gma-Chr10 41537728 41544629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01446 76 141 ARID Transcription Factor Family AT1G76110 38.235 1.54e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma10g01446 ARID 8.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01446 - - var:108325455 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01446 10 41537728 41544629 Gma20g00940 20 35986218 35988637 GST