Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01429 ATGCCGGTGAAGAAGTATTACTGCGATTACTGCGACAAGCTATTCCAAGACACACCAGCAGATCGGAAACGACACGTTCAGGGCATTCAACACCACCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAACAAATCCCTCCGATTCCCAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGCTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTCCAGCAGCCGCCAATCGTAACCACACCGTCGCCTTCACCAGGGAGTGTGGTAGGAGTGTCATTCGGCAATCTTCCCCCCTCCCTGCAGCCTCCGCCTGACGGCGTATATCTCCACCTTCCCTTTCTCGACTGGGGATAG 384 0.5312 MPVKKYYCDYCDKLFQDTPADRKRHVQGIQHHQAKARWYDSFKQQQIPPIPNRPLCFHFVNTGFCRYGDSCKYLHPVPNNNVQQPPIVTTPSPSPGSVVGVSFGNLPPSLQPPPDGVYLHLPFLDWG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01429 127 PANTHER NUCLEASE-RELATED 1 127 - -
Gma10g01429 127 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Gma10g01429 127 SUPERFAMILY CCCH zinc finger 51 79 IPR036855 GO:0046872
Gma10g01429 127 Gene3D - 46 94 - -
Gma10g01429 127 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Gma10g01429 127 SMART c3hfinal6 51 77 IPR000571 GO:0046872
Gma10g01429 127 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Gma10g01429 127 Gene3D Classic Zinc Finger 3 45 - -
Gma10g01429 127 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01429 Gma-Chr10 41353552 41354441 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g01429 zf-U1 2.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01429 K13152 - gmx:100527203 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01429 10 41353552 41354441 Gma10g01429 10 41353552 41354441 ECH