Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01411 ATGACTAGGAAGAAAGTGAAACTTGCCTATATCACCGATGTCACGGCAAGAAAATCCACTTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACCATTCTTTGCGGTATCCCAGCGTGCGCTATAATTTCCAGTCCTTTTGATTCTAAGCCAGAGGTTTGGCCAGATCCAGAGAGAGCCAAACAGGTGATTCAGAAGTATCTGGATGCATCTGTACTAGATGAAAGCAAGAATGTCAACCAAGAGAGCTTCATCATGCAAAGGATTGCCAAAGCCCAGGAACAATTGAAGAAACATCGTCAGGAGAACCATGAGAAGGAGATGGCCTTGTCCATGTTCCAGTACATGCAAGGTGAAGACCTGCCAAATAATGTTGAAGAACTGAAAGAACTCAACAAGCTGATTGAGAAGAATTTGAAGGAAATTGAAAATAAGTTGGCTGTCAATGGTGAGTCTATTAGTGTTTAG 480 0.4188 MTRKKVKLAYITDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIISSPFDSKPEVWPDPERAKQVIQKYLDASVLDESKNVNQESFIMQRIAKAQEQLKKHRQENHEKEMALSMFQYMQGEDLPNNVEELKELNKLIEKNLKEIENKLAVNGESISV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01411 159 Coils Coil 86 113 - -
Gma10g01411 159 Coils Coil 129 152 - -
Gma10g01411 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Gma10g01411 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma10g01411 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma10g01411 159 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Gma10g01411 159 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Gma10g01411 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Gma10g01411 159 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gma10g01411 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma10g01411 159 PANTHER MADS BOX PROTEIN 2 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01411 Gma-Chr10 41153831 41154310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01411 3 158 Type I MADS-box Gene Family AT1G65300 43.827 1.93e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma10g01411 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01411 - - gmx:100792290 271.937