Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01407 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTCAATCACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTATCTAAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGTATTGACCCAACCACACACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGAATATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTAATTTGGTTGATCATCATCAGCCACCAAAAACCATGCCTAATTCTTCATCAGAGAGATACCCTCTTGAAGTTTCCACTACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGCACCACCACCACCACCTGCCACGAAAACAACAACAACAACACTTCTGATTTGGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAGCATGGCCCTCTCTTCAAACCCCAACACCTCTCTTTGTTTCATTCTACCCTCCACTTCTTCAGACATTAATAATAACAACTCCATCATAACCTCCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACATGTGAAGCTCCAATCTAATAACAACAACCCTTCTTCCATTTCATCTGATGGGGTTCAAAACTGGGAAACAAGTAACAACACAAACAAAAACAATGGGAATATGCAGTTACAAAGTAGCACAAACTACCTTGACAGCACGTGGGGGGTGGCAGAGTCTATGAAGATTGTTAACATTAACAAAGAGGCTCAAGTAGTGCCTCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTTAACACCCCGTTTATTCTGGGAAACAACACAGCGCAGAATCATCAAATTCAAACCTCTCAATCTATCTACACTGAGGTTATTAAACCAGAAACAGGTTTCATAATAGACGAGTCATGTACTAGTAATTGGCACCATCATCAGCCACCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA 1293 0.4323 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPTTHKPLSEVENDKDMNMMPPSTDKSTQKASVGSNEVVSNLVDHHQPPKTMPNSSSERYPLEVSTTSSTQELFLDRFGTTTTTCHENNNNNTSDLVGSYFSFQHLNYGTTTSMALSSNPNTSLCFILPSTSSDINNNNSIITSSSMLPSIFPTQHVKLQSNNNNPSSISSDGVQNWETSNNTNKNNGNMQLQSSTNYLDSTWGVAESMKIVNINKEAQVVPLQAEQEDLKWSEYLNTPFILGNNTAQNHQIQTSQSIYTEVIKPETGFIIDESCTSNWHHHQPPPAFQLSDIYSKDLQRFSVTFGQTL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01407 430 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma10g01407 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma10g01407 430 SMART sant 13 63 IPR001005 -
Gma10g01407 430 SMART sant 66 114 IPR001005 -
Gma10g01407 430 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma10g01407 430 PANTHER HOMEODOMAIN-RELATED 1 423 - -
Gma10g01407 430 CDD SANT 17 61 IPR001005 -
Gma10g01407 430 MobiDBLite consensus disorder prediction 164 183 - -
Gma10g01407 430 PANTHER MYB DOMAIN PROTEIN 55 1 423 - -
Gma10g01407 430 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma10g01407 430 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma10g01407 430 MobiDBLite consensus disorder prediction 283 314 - -
Gma10g01407 430 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma10g01407 430 Gene3D - 11 67 - -
Gma10g01407 430 CDD SANT 69 109 IPR001005 -
Gma10g01407 430 MobiDBLite consensus disorder prediction 121 152 - -
Gma10g01407 430 Gene3D - 69 141 - -
Gma10g01407 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01407 Gma-Chr10 41035250 41037351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01407 1 430 MYB Transcription Factor Family AT1G09540 47.826 3.60e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g01407 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01407 K09422 - gmx:100790184 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01407 10 41035250 41037351 Gma20g00898 20 35405082 35406665 ECH
Gma03g02097 03 46514817 46516799 Gma10g01407 10 41035250 41037351 ECH
Gma19g02133 19 50227174 50229231 Gma10g01407 10 41035250 41037351 ECH
Gma10g01407 10 41035250 41037351 Gma10g01407 10 41035250 41037351 ECH
Gma10g01407 10 41035250 41037351 Gma20g00898 20 35405082 35406665 GST
Gma19g02133 19 50227174 50229231 Gma10g01407 10 41035250 41037351 PCT
Gma03g02097 03 46514817 46516799 Gma10g01407 10 41035250 41037351 PCT
Gma10g01407 10 41035250 41037351 Gma19g02133 19 50227174 50229231 PCT
Gma10g01407 10 41035250 41037351 Gma03g02097 03 46514817 46516799 PCT