Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01406 atgcacctgcaccttaatggattgaaccaaagagtcatcggcggtttgaagaatgaactacacaagtggttttctgatggaacaccattagacagtgacaccatgacgatactacgcaagaaatgggcagcctattttctaCAAGTTCAAAAGAAGGATGATTTTTTTATGTCTTTTGGTAAACTGTTGCGGTTGTCTCCTTACTCTCTCAAAGATTTTGAAAATGCAATTAGCCACAAGGAAAGCAATGTAGTTCTTCTAGTGGAATCTCATGTAGTACTCTTACTAGTGCTCATCAAAGGTGATGATGAATACTCTGCAGCTGTTCTGGAAAAAATACAGAAGAAGAGTGAATATTTTGATTGGGAGATGGAGAAATGGCAAATTCGTACAAGTCCCTTAGGTAAGGACAAATATTATAATAGGTATTGGTGGTTTCACCGTGATGGGAGGATATTTGTTGAAAGTTCTGACTCCAAGGTATCAGGAGTCTACAGTAGCCAAGAAGAGAAAAGTTCAAAGGATTTGGTGCATAAGGTTGCCCAGGATGACTCTATGGTCCGAAGGTCTACTCGTGTTTGGGCTCCACCTAGGGAAAATCCTTCCAAAGCTTTCGTCAAATATGCCAATGACACATTAAGAAGAATTGGAAAGGGATCGCGAGGTCATGTTGTTGTATTGCCTACTGTTGTTGTCAATAATCGACAATATCGAGATGTGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGCTGGAAGGATAATTTAGATGAAGCACTATTAGAGAATGAATTTAGATGA 804 0.3221 MHLHLNGLNQRVIGGLKNELHKWFSDGTPLDSDTMTILRKKWAAYFLQVQKKDDFFMSFGKLLRLSPYSLKDFENAISHKESNVVLLVESHVVLLLVLIKGDDEYSAAVLEKIQKKSEYFDWEMEKWQIRTSPLGKDKYYNRYWWFHRDGRIFVESSDSKVSGVYSSQEEKSSKDLVHKVAQDDSMVRRSTRVWAPPRENPSKAFVKYANDTLRRIGKGSRGHVVVLPTVVVNNRQYRDVETNECLTNNGGCWKDNLDEALLENEFR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01406 267 ProSiteProfiles DDT domain profile. 43 104 IPR018501 -
Gma10g01406 267 SMART testlast3 40 104 IPR018501 -
Gma10g01406 267 Pfam DDT domain 54 99 IPR018501 -
Gma10g01406 267 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 54 114 - -
Gma10g01406 267 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 111 170 - -
Gma10g01406 267 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 170 212 - -
Gma10g01406 267 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 129 189 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01406 Gma-Chr10 40990535 40994338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01406 168 255 Miscellaneous Gene Families AT2G30290 34.188 1.33e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma10g01406 WSD 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01406 - - gsj:114371741 398.667