Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01403 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTCGTGGGAAGAAGTGGAACTGAAATGCTCACTAATGAGGCTGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATAAAACCTGTATATGTTTTTGATGGGAAGCCACCTGATTTGAAGAAACAAGAGCTTGCCAAACGTTACTCCAAGAGAGCTGAGGCTACTGAAGATTTGTCAGAAGCCTTAGAGACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGTAAAGCTGGAAAGGCAAGTTCATATCTGTTGTGTGTTTATGGTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTCCTAAATTTCTTCGCCACCTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTCGAAGTTGCGAAGATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTGAAAATATACTGGAGAACCTAAACAAAGAGAGGTACCAGATACCCGATAATTGGCCATATCAGGAGGCTCGGCGGCTTTTTAAAGAACCATTGGTCATAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTAAATGAGAATGGCTTCAACAGGGATAGAGTGACTAAGGCAATAGAAAAAATTAAAGTGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACAGCAAATCCATCTGTACCTATTAAACGCAAGGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAG 1170 0.4162 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSYLLCVYGVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPLVITDEKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANPSVPIKRKETPVNNAKETNKKTKAGGGKKKK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01403 389 Gene3D - 230 293 - -
Gma10g01403 389 CDD H3TH_FEN1-Euk 229 297 - -
Gma10g01403 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Gma10g01403 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Gma10g01403 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Gma10g01403 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 231 246 IPR006084 -
Gma10g01403 389 SMART HhH_4 228 261 IPR008918 GO:0003677|GO:0003824
Gma10g01403 389 Hamap Flap endonuclease 1 [fen]. 1 354 IPR023426 GO:0016788
Gma10g01403 389 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 226 361 IPR036279 -
Gma10g01403 389 Gene3D - 10 229 - -
Gma10g01403 389 MobiDBLite consensus disorder prediction 346 389 - -
Gma10g01403 389 SMART xpgn3 1 108 IPR006085 GO:0004518
Gma10g01403 389 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Gma10g01403 389 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Gma10g01403 389 SMART xpgineu 147 226 IPR006086 GO:0004518
Gma10g01403 389 Coils Coil 99 119 - -
Gma10g01403 389 PANTHER FLAP ENDONUCLEASE 1 1 379 - -
Gma10g01403 389 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Gma10g01403 389 SMART 53exo3 29 313 IPR002421 GO:0003677
Gma10g01403 389 Pfam XPG I-region 150 241 IPR006086 GO:0004518
Gma10g01403 389 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 379 IPR006084 -
Gma10g01403 389 SUPERFAMILY PIN domain-like 2 241 IPR029060 -
Gma10g01403 389 CDD PIN_FEN1 4 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01403 Gma-Chr10 40878040 40882903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01403 1 368 Core DNA Replication Machinery Family AT5G26680 87.228 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01403 K04799 - gmx:100808044 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01403 10 40878040 40882903 Gma10g01403 10 40878040 40882903 ECH
Gma10g01403 10 40878040 40882903 Gma20g00894 20 35305680 35311326 GST