Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01400 ATGTCTACCTCAAGGCCTAGCCAATCATCCAGCAATTCAAGGAGATCAAGACATAGTGCTAGAATGGCTCAGGCAACTGTAGATGCAAAAATCCATGCAACTTTTGAGGAGTCCGGTAGTTCCTTTGATTACTCCAGTTCGGTGCGCGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGACAAAGTTACAACAGCTTACCTCAATCACATGCAGAGAGGCAAGATGATTCAGCCTTTTGGTTGCTTGTTGGCCATTGATGAGAAAACATGTAAGGTCATTGCATACAGTGAGAACGCGCCCGAAATGCTGACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTCTATTCACTGCACCAAGTGTTTCTGGATTGCAGAAGGCTCTAGGATGTGCGGACGTTTCGCTTCTTAACCCCATACTTGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTGTCCATCGCGTCACTGGTAGTTTGATTGTTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCATTGCCTAGTGGGAACATGGAAAGACTATGTGATACTATGGTTCAGGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCCGGTCTTGAGCCATATCTGGGTTTGCACTATCCAGCCACCGACATTCCCCAGGCTTCACGCTTTTTATTTAGGAAGAACAAGGTTCGTATGATAGTTGACTGTCATGCAAAACACGTGAGGGTTCTTCAAGATGAAAAACTCCAATTTGATTTGATTTTGTGTGGTTCCACCTTAAGAGCTCCTCATAGTTGCCACGCGCAGTACATGGCTAACATGGATTCAATTGCTTCCCTGGTTTTGGCAGTTGTAGTCAATGACAACGAAGAAGATGGGGACACTGATGCTGTTCAGCCACAAAAGAGGGAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCGTCCATGTGCACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAGGCACTCTTGTGTATGCTGATGCGAGATGCACCCCTAGGAATTGTATCAGAGAGTCCTAATATAATGGATCTAGTTAAATGTGATGGAGCTGCCCTCATATACAGGAACAAAGTATGGAGATTAGGAGTGACACCAAGTGAACCCCAGATAAGAGAGATAGCTTTGTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTTAGTACAGATAGCTTGTTTGATGCAGGGTTCCCATCGGCTCTTTCTCTGGGTGATGTTGTGTGTGGAATGGCATCTGTTAGAGTAACTGCAAAAGACATGGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAGGCTGGAGAAAAAGATGATAGTAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCAAGGAGTTTACCTTGGAAGGAATATGAAATGGATGCTATTCATTCCTTGCAGATAATACTGAGAAATGCATTCAAAGAAGATACCGAGAGTTTGGATTTAAACGCAAAAGCAATTAATACAAGACTAAGTGATTTGAAGATTGAAGGGATAAACGATTTGAAGATTGAAAGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATCGTTAGGTTGATTGACACAGCAACAGTGCCTATTTTGGCCGTTGATGTTGATGGGCTGGTCAATGGGTGGAACATAAAAATTGCTGAGTTGACGGGTCTTCCAATTGGTGAAGCTACTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTAACTTAGCACTGCTAGGTGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGGTCTAAGATGGATTCTGGTCCTATTAGTTTGGTAGTAAATGCTTGCGCGAGCAGGGATCTTCGAGATAATGTTGTCGGGGTTTGTTTTGTGGCCCATGATATAACTGCTCAGAAGAATGTCATGGACAAATTCATCCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCGCAATCCATTAATCCCTCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGATGAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGATTTTTGGCACCCAGATGGCTGCTTGTCGCCTAAAGAATCAAGAAGCTTTTGTTAATTTGGGCGTCGTACTTAATAAAGCCATGACTGGTTCAGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGTAAGAAATTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCAGAGCTCCAACAAGCATTACATATTCAGCGTCTATCTGAGCAAACTGCTTCGAAGAGATTGAATGCATTAAGTTACATGAAAAGGCAGATCAGGAATCCTTTGTGTGGAATTGTATTTTCCCGGAAAATGTTGGAGGGTACTGACTTGGGAACAGAACAGAAACAACTTCTGCGCACTAGTGCTCAGTGCCAGCAGCAGCTTAGTAAAATTCTTGATGACTCAGATCTTGACACCATCATAGATGGTTACTTGGATCTTGAGATGGCTGAGTTCACCCTGCATGAAGTTCTGGTTACCTCCCTTAGTCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGGGCATATTATGATGGAAACTTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTGGCTGACTTTTTACTTATTTCCATCAATTTCACTCCAAATGGAGGTCAGGTTGTTGTAGCAGGCTCTCTAACCAAAGAACAGTTAGGCAAATCTGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTACCAGAAGTGTTACTGAATCAGATGTTCGGAAACAATGGGCTAGAATCCGAGGAGGGTATTAGCCTACTGATAAGCAGAAAGCTGCTGAAGCTGATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCAGCCCATAATTTGAAAGCTTAA 3393 0.435 MSTSRPSQSSSNSRRSRHSARMAQATVDAKIHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLNHMQRGKMIQPFGCLLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSVSGLQKALGCADVSLLNPILVHCKTSGKPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHSCHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKRERLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVHKEIELEYQIIEKNILRTQALLCMLMRDAPLGIVSESPNIMDLVKCDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTGFSTDSLFDAGFPSALSLGDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLSDLKIEGINDLKIERMQELEAVTSEIVRLIDTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLTLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGIVFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01400 1130 ProSiteProfiles PAS repeat profile. 623 693 IPR000014 -
Gma10g01400 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 736 IPR035965 -
Gma10g01400 1130 PANTHER PHYTOCHROME A 1 1125 - -
Gma10g01400 1130 Pfam Phytochrome region 414 587 IPR013515 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 132 154 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 232 251 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 317 338 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Gma10g01400 1130 Gene3D PAS domain 615 752 - -
Gma10g01400 1130 Gene3D - 198 559 IPR029016 -
Gma10g01400 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1114 IPR036890 -
Gma10g01400 1130 SMART gaf_1 217 409 IPR003018 GO:0005515
Gma10g01400 1130 Gene3D - 940 1117 IPR036890 -
Gma10g01400 1130 ProSiteProfiles Histidine kinase domain profile. 907 1126 IPR005467 -
Gma10g01400 1130 Pfam PAS fold 626 740 IPR013767 GO:0006355
Gma10g01400 1130 Pfam PAS fold 756 878 IPR013767 GO:0006355
Gma10g01400 1130 SMART HisKA_10 900 965 IPR003661 GO:0000155|GO:0007165
Gma10g01400 1130 Gene3D PAS domain 75 320 - -
Gma10g01400 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gma10g01400 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Gma10g01400 1130 MobiDBLite consensus disorder prediction 42 61 - -
Gma10g01400 1130 CDD PAS 767 878 IPR000014 -
Gma10g01400 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 876 IPR035965 -
Gma10g01400 1130 CDD HisKA 905 955 IPR003661 GO:0000155|GO:0007165
Gma10g01400 1130 SUPERFAMILY GAF domain-like 408 585 - -
Gma10g01400 1130 SUPERFAMILY GAF domain-like 197 396 - -
Gma10g01400 1130 MobiDBLite consensus disorder prediction 1 25 - -
Gma10g01400 1130 MobiDBLite consensus disorder prediction 1 20 - -
Gma10g01400 1130 Gene3D - 404 576 IPR043150 -
Gma10g01400 1130 CDD PAS 634 740 IPR000014 -
Gma10g01400 1130 SMART pas_2 625 691 IPR000014 -
Gma10g01400 1130 SMART pas_2 755 824 IPR000014 -
Gma10g01400 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 185 IPR035965 -
Gma10g01400 1130 Pfam PAS fold 68 184 IPR013654 GO:0006355
Gma10g01400 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Gma10g01400 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 217 389 IPR016132 -
Gma10g01400 1130 TIGRFAM sensory_box: PAS domain S-box protein 630 746 IPR000014 -
Gma10g01400 1130 Pfam GAF domain 217 399 IPR003018 GO:0005515
Gma10g01400 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1120 IPR003594 -
Gma10g01400 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1125 - -
Gma10g01400 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 317 326 IPR013516 -
Gma10g01400 1130 Gene3D PAS domain 769 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01400 Gma-Chr10 40856643 40861306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01400 1 1126 Histidine Kinase Gene Family AT1G09570 77.562 0.0 1839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01400 K12120 - gmx:547810 2173.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01400 10 40856643 40861306 Gma10g01400 10 40856643 40861306 ECH
Gma10g01400 10 40856643 40861306 Gma20g00891 20 35284548 35290193 GST
Gma19g02129 19 50181682 50188016 Gma10g01400 10 40856643 40861306 PCT
Gma03g02093 03 46469949 46472130 Gma10g01400 10 40856643 40861306 PCT
Gma10g01400 10 40856643 40861306 Gma19g02129 19 50181682 50188016 PCT
Gma10g01400 10 40856643 40861306 Gma03g02093 03 46469949 46472130 PCT