Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01396 ATGGCTTCAACCATAGGTATCTCTTCTTCCATCTCCATATACAAAACCCCCTCTTTTCAACTCTTCAAAAGACCAGCCGCCACAACCACCTCCGTTTTCTTCAACACCCTTCCCCGTAACCGTGACGCCACACTCTCTTCCGTTCCTTCCGCCATTGCCACCCCATCCATTCTCACCGAACAACCCTTAAAGGGCTTAACTTTGGACGACCTTAGTAATAGCGACCAATTTGGCTATGACTTCGAACCCGACACCAACGTTAGCGACCACGAACTCGACATTTCCAAGTTGGGTTTACCTTCGCCCCTCGTCCACTCCCTCCAAAAACGTGGGATCATCAGCCTTTTCCCCATTCAGAGAGCTGTGTTGGTGCCTGCACTAGAAGGTAAAGATATCATTGCTCGTGCAAAGACAGGGACTGGCAAGACTTTAGCATTCGGAATTCCAATTCTTAAAGGTCTCACTAATGATGATGAACAAAGTCCTCACAGGCGGTCTGGGAGGCTTCCTAAAGCGTTGGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTTGAGAAAGAGATACAAGAATCTGCACCTTACCTCAAAACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAGAGTGCCCTTTCACGGGGTGTTGATGTGGTGGTTGGGACGCCGGGTAGAATAATTGACCTGGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTGCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTAGATAAGGTCCCGACTCAGCGCCAGACCATGCTTTTTTCTGCGACCATGCCTGGTTGGGTTAAGAAACTGTCCAGAAAGTATTTGAATAACCCTTTGACGATTGATTTGGTTGGTGAACAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCATTATTAGCCACTGCCACTTCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACTCAGACAAAAAAGGATGCTGATGAAGTATCAATGGCATTAACAAGTAGTATAGCTTCCGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAGTTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGCCGTACTGGGCGTGCAGGAAAAGAGGGTACAGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGGAGCAAATTTGAATTTGTTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTAAATAGAGTTCATCCTGAGTCTGTTGAATTTTTCACTGCAACTGCACAAAAACTGGTTGAAGAACAAGGAGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCATCATGCCGGTCTCTTATCAATCATGAACAGGGATGGACTACATTGCAACTGACTCGAGATTCAGATACTTCTGGAAGATATTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTCAAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAAATAGCTAAAGAGTTGCTCAATAAAGATATGCCATCTGGAAATACTATCTCCAAAATCACCAAGTTACCTCCTTTGCAAGACAATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCCGACAGAGATAGAAGTAACCGTAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAGGACTCTAATGATGAGTTTGGACGAGGTGGTAGAAGTTTCAGATCTGGCAACAACAGGTCTCGAACGGGAAAAAGCAGCGGCAATGATTGGCTAATTGGAGGCAGTAGTAGATCAAGCAGGTTTTCATCATCCAACAGAGATGGGGGCCATGGAggggcctgttttaattgtggaaaacctggccatcgggcatcagattgtatcacccaaaaaCGAGTCTTTTTCTAG 2208 0.4357 MASTIGISSSISIYKTPSFQLFKRPAATTTSVFFNTLPRNRDATLSSVPSAIATPSILTEQPLKGLTLDDLSNSDQFGYDFEPDTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTNDDEQSPHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAMEEILESSAEQVVATLNRVHPESVEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGRYFSARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNKDMPSGNTISKITKLPPLQDNEPASDFYGKFSDRDRSNRRGSRDQRGFRSSRGWEGGQDSNDEFGRGGRSFRSGNNRSRTGKSSGNDWLIGGSSRSSRFSSSNRDGGHGGACFNCGKPGHRASDCITQKRVFF 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01396 735 CDD GUCT_Hera 529 608 - -
Gma10g01396 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Gma10g01396 735 CDD SF2_C_DEAD 314 443 - -
Gma10g01396 735 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 725 - -
Gma10g01396 735 Gene3D - 318 522 IPR027417 -
Gma10g01396 735 Pfam Zinc knuckle 713 727 IPR001878 GO:0003676|GO:0008270
Gma10g01396 735 SMART helicmild6 354 434 IPR001650 -
Gma10g01396 735 PANTHER - 9 725 - -
Gma10g01396 735 SMART ultradead3 111 317 IPR014001 -
Gma10g01396 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 300 IPR014001 -
Gma10g01396 735 MobiDBLite consensus disorder prediction 673 706 - -
Gma10g01396 735 Pfam DEAD/DEAH box helicase 116 289 IPR011545 GO:0003676|GO:0005524
Gma10g01396 735 Gene3D - 93 304 IPR027417 -
Gma10g01396 735 MobiDBLite consensus disorder prediction 605 707 - -
Gma10g01396 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Gma10g01396 735 Pfam GUCT (NUC152) domain 521 621 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gma10g01396 735 Pfam Helicase conserved C-terminal domain 328 434 IPR001650 -
Gma10g01396 735 SMART c2hcfinal6 713 729 IPR001878 GO:0003676|GO:0008270
Gma10g01396 735 MobiDBLite consensus disorder prediction 629 652 - -
Gma10g01396 735 ProSiteProfiles Zinc finger CCHC-type profile. 714 727 IPR001878 GO:0003676|GO:0008270
Gma10g01396 735 SUPERFAMILY Retrovirus zinc finger-like domains 695 729 IPR036875 GO:0003676|GO:0008270
Gma10g01396 735 CDD DEADc 103 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01396 Gma-Chr10 40789312 40795635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01396 94 456 Eukaryotic Initiation Factors Gene Family AT1G72730 36.785 3.81e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01396 - K16911 gmx:100808574 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01396 10 40789312 40795635 Gma20g00887 20 35200650 35206046 ECH
Gma10g01396 10 40789312 40795635 Gma10g01396 10 40789312 40795635 ECH
Gma10g01396 10 40789312 40795635 Gma20g00887 20 35200650 35206046 GST
Gma19g02125 19 50142014 50147585 Gma10g01396 10 40789312 40795635 PCT
Gma03g02087 03 46423655 46431481 Gma10g01396 10 40789312 40795635 PCT
Gma10g01396 10 40789312 40795635 Gma19g02125 19 50142014 50147585 PCT
Gma10g01396 10 40789312 40795635 Gma03g02087 03 46423655 46431481 PCT