Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01379 ATGGGAAGGCACTCTTGTTGTTACAAGCAGAAGCTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATAGACCCTGTCACACATAAACCACTTTCTGAAGTTGAGAATGGAGAGGACAATGGTAGGAGCCAAGAGAAAGCACCAGAAGTGTCTAACGAACTGAACCTCTTGAAATCAGAGAGCTCCAAATCTGATTCAGCTTCCTATGAGCAGAGAACATCAATTTCTCCAAAAGCCTATGCACCTGAGGTGGATGGTTCCTGCAGCTCCAAGATTGAAAGCAATTTTGTAACCAACAACAACTGTTACAGCAAAGACTTGTTCCTAGACAGGTTTATGAGTTCGAGTAGTAGCCGCCAAGAGAGCTACACCAATAGTTGCCAGCCCTTAGATTTGATGGGGAATTTTCCAATTCAGATGAGTTATGCAACCAATGATCACAGTCTCCCAAATGATTCAAATTCTGGTCATTGGTTCAGCCAAACTGGAAGGCCTTTTGATATGAACTCTGATCAGTTTCCTTTCAATGCTGTTGCCACTTCTATTAATCCAACACCTACAAGTACAACCAACTTGTTTCTTCCTAATAATTCTTTTTGCTACAAGCCTTCTTCACTTGCTGTTCCCTCTGACAGTGTTTCCACACCCTATGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGCAGCATTAGGAGTAATAGCAGCACAGAATTGAGAAGTAGCAGCCCCTTGAACAACATCTTTTCTTCTTGGGGATTGGCAGATTGTAGCATCTCTACTACTACTAAAGAGGCACAGATTCATATGATGGAGAATCACAATACAGAAGAACCTAAGTGGGATGAGTACCTTCATAACCCTATCTCAATGCTGGCTTCTTCTGTACAAAACCAAGCTCCTGAGTCTTTATGCAATGAGATAAAAACATCCATGCATTTGGTACCTGATACTTTAGGGGCTATGTTACCTCATATTCATACCAAGCAGCACGAACAGTCTCAAACTTCTAGTTTCTTTTCCAAGGACATCCAGAAGCTCAGGGCAGCCTTTGGACACATGTAA 1368 0.4262 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGEDNGRSQEKAPEVSNELNLLKSESSKSDSASYEQRTSISPKAYAPEVDGSCSSKIESNFVTNNNCYSKDLFLDRFMSSSSSRQESYTNSCQPLDLMGNFPIQMSYATNDHSLPNDSNSGHWFSQTGRPFDMNSDQFPFNAVATSINPTPTSTTNLFLPNNSFCYKPSSLAVPSDSVSTPYGSHYWEASASNNSNSSIRSNSSTELRSSSPLNNIFSSWGLADCSISTTTKEAQIHMMENHNTEEPKWDEYLHNPISMLASSVQNQAPESLCNEIKTSMHLVPDTLGAMLPHIHTKQHEQSQTSSFFSKDIQKLRAAFGHM 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01379 455 MobiDBLite consensus disorder prediction 122 144 - -
Gma10g01379 455 PANTHER MYB DOMAIN PROTEIN 55 1 449 - -
Gma10g01379 455 PANTHER HOMEODOMAIN-RELATED 1 449 - -
Gma10g01379 455 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma10g01379 455 CDD SANT 17 61 IPR001005 -
Gma10g01379 455 SMART sant 13 63 IPR001005 -
Gma10g01379 455 SMART sant 66 114 IPR001005 -
Gma10g01379 455 Gene3D - 11 67 - -
Gma10g01379 455 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma10g01379 455 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma10g01379 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma10g01379 455 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma10g01379 455 MobiDBLite consensus disorder prediction 122 150 - -
Gma10g01379 455 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma10g01379 455 Gene3D - 68 144 - -
Gma10g01379 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma10g01379 455 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01379 Gma-Chr10 40636448 40638184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01379 1 287 MYB Transcription Factor Family AT4G01680 55.401 6.25e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g01379 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01379 K09422 - gmx:100815881 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01379 10 40636448 40638184 Gma02g00062 02 733767 735765 GST
Gma19g02111 19 50002787 50004533 Gma10g01379 10 40636448 40638184 PCT
Gma03g02074 03 46300639 46302596 Gma10g01379 10 40636448 40638184 PCT
Gma10g01379 10 40636448 40638184 Gma19g02111 19 50002787 50004533 PCT
Gma10g01379 10 40636448 40638184 Gma03g02074 03 46300639 46302596 PCT